Browse Element(s) Details


OsAffx.2228.1.S1_x_at

Description tigr:9629.m04206
TID=OsAffx.2228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4366011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein
LOC_Os01g43680Os.763.1.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_x_at11/111+25356661..25360088expressed protein
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2228.1.S1_x_at--251--1711Chr01:25351603..25351627 (25 bp)
ACCACTGTCATGGAACTCCGGCAGC
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--768--1951Chr01:25351606..25351630 (25 bp)
ACTGTCATGGAACTCCGGCAGCAAC
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--611--3931Chr01:25351621..25351645 (25 bp)
CGGCAGCAACTTCCCCTTCACACAT
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--926--3651Chr01:25351636..25351660 (25 bp)
CTTCACACATTGGTGGTGGAGCAGA
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--369--811Chr01:25351672..25351696 (25 bp)
ATGGTGGAGCTTGACCCTGACGGCA
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--514--8911Chr01:25351683..25351707 (25 bp)
TGACCCTGACGGCAACAATGGTGGA
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--14--5811Chr01:25351684..25351708 (25 bp)
GACCCTGACGGCAACAATGGTGGAG
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--469--1811Chr01:25351685..25351709 (25 bp)
ACCCTGACGGCAACAATGGTGGAGC
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--602--4191Chr01:25351686..25351710 (25 bp)
CCCTGACGGCAACAATGGTGGAGCA
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--753--3851Chr01:25351688..25351712 (25 bp)
CTGACGGCAACAATGGTGGAGCAAA
LOC_Os01g43660
OsAffx.2228.1.S1_x_at--710--8931Chr01:25351689..25351713 (25 bp)
TGACGGCAACAATGGTGGAGCAAAG
LOC_Os01g43660
Target Sequence 
ACCACTGTCATGGAACTCCGGCAGCAACTTCCCCTTCACACATTGGTGGTGGAGCAGAGCGGTATGGGGATGGTGGAGCT
TGACCCTGACGGCAACAATGGTGGAGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2228.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis