Browse Element(s) Details


OsAffx.22409.1.S1_at

Description gb:NM_186823.1
DB_XREF= gi:34900731
GEN=OJ1341_A08.20
TID=OsAffx.22409.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1341_A08.20 (OJ1341_A08.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1399011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13950Os.30861.1.S1_at2/117+7971781..7974078hypothetical protein
LOC_Os07g13960OsAffx.32036.1.S1_at2/117+7976222..7977932hypothetical protein
LOC_Os07g13980Os.25696.2.S1_x_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13980OsAffx.16251.1.S1_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13990OsAffx.22409.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.10179.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.28435.2.S1_s_at1/117+7989621..7993123hypothetical protein
LOC_Os07g14000OsAffx.24637.1.S1_at10/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.23361.2.S1_x_at2/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.27394.1.S1_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14000Os.13016.1.S1_a_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14010NANA7+8000563..8002072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14020OsAffx.32072.1.S1_at11/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.1.S1_x_at9/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.2.S1_x_at3/117+8003973..8005096hypothetical protein
LOC_Os07g14030OsAffx.28437.1.S1_s_at11/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14030OsAffx.28437.3.S1_s_at1/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14040Os.54287.1.S1_at2/117+8011433..8013743hypothetical protein
LOC_Os07g14050NANA7+8015154..8017947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14060Os.31497.2.S1_x_at1/117+8018079..8020852retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22409.1.S1_at--738--5071Chr07:7991218..7991242 (25 bp)
GCAGCGTCGGTGACCCGACGATGAC
LOC_Os07g13990
OsAffx.22409.1.S1_at--349--6311Chr07:7991199..7991223 (25 bp)
GATGACCCGCGCCACGCACGAAGGT
LOC_Os07g13990
OsAffx.22409.1.S1_at--411--4151Chr07:7991192..7991216 (25 bp)
CGCGCCACGCACGAAGGTTGTGGAA
LOC_Os07g13990
OsAffx.22409.1.S1_at--97--10831Chr07:7991175..7991199 (25 bp)
TTGTGGAAGAGCACGAGCCACTGCT
LOC_Os07g13990
OsAffx.22409.1.S1_at--151--8191Chr07:7991171..7991195 (25 bp)
GGAAGAGCACGAGCCACTGCTGGCA
LOC_Os07g13990
OsAffx.22409.1.S1_at--63--4411Chr07:7991159..7991183 (25 bp)
GCCACTGCTGGCAGCGACCCGAGAT
LOC_Os07g13990
OsAffx.22409.1.S1_at--734--8311Chr07:7990204..7990228 (25 bp)
GGCTCAACTCCTATGGGAGGGAGCT
LOC_Os07g13990
OsAffx.22409.1.S1_at--1100--1851Chr07:7990174..7990198 (25 bp)
ACGTCTACGTCGTGGACGCGTCCTC
LOC_Os07g13990
OsAffx.22409.1.S1_at--129--7351Chr07:7990139..7990163 (25 bp)
GTGAAGAGGGCCTGCGCCGGGAGGT
LOC_Os07g13990
OsAffx.22409.1.S1_at--655--3971Chr07:7990122..7990146 (25 bp)
CGGGAGGTGCGACCGGCCGGCCGAG
LOC_Os07g13990
OsAffx.22409.1.S1_at--834--8411Chr07:7990108..7990132 (25 bp)
GGCCGGCCGAGGTGTCCACGCACGG
LOC_Os07g13990
Target Sequence 
GCAGCGTCGGTGACCCGACGATGACCCGCGCCACGCACGAAGGTTGTGGAAGAGCACGAGCCACTGCTGGCAGCGACCCG
AGATGGGGATGAGGAGGCGTGCTGGCGGCGGAGGGTGGAGTTGCCGGGGCGCGAAGGAGATCCAGCGCCCGCCGGCGGCA
GCCAAGGTNNNGNNNNNCNNNNCNGNNNGGNNGNNCNGCNNNCNCCNNNNNGNGNNCCNNCCGTGGCGCGCCCTGCTGTC
TCGCGACCCGGTCTTCGCCGCCGCCCACGCAGCGAGGCACCCGGCCCCGCACCTCGCCGTCGCCGTCCGCGGCCGGCTCA
ACTCCTATGGGAGGGAGCTGGTGGACGTCTACGTCGTGGACGCGTCCTCCGGCGACATCGTGAAGAGGGCCTGCGCCGGG
AGGTGCGACCGGCCGGCCGAGGTGTCCACGCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis