Browse Element(s) Details


OsAffx.22543.1.S1_x_at

Description tigr:9635.m04549
TID=OsAffx.22543.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4529011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22543.1.S1_x_at--1154--8011Chr07:27018626..27018650 (25 bp)
GGAGTGGCAGGAACGTGCCCGCCGC
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--845--8111Chr07:27017863..27017887 (25 bp)
GGACGGAGGTGATGATCCCGATCAT
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--1020--8851Chr07:27017854..27017878 (25 bp)
TGATGATCCCGATCATGGCCGTCCA
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--651--4231Chr07:27017741..27017765 (25 bp)
CCGATGGCGTTCATGCCGTTCGGCG
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--1067--8671Chr07:27017704..27017728 (25 bp)
TGTGCATCGGCCAGAACATGGCGCT
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--254--9131Chr07:27017647..27017671 (25 bp)
TGCGGCGCTTCGAGTTCCGGCTATC
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--5--1231Chr07:27017635..27017659 (25 bp)
AGTTCCGGCTATCGCCGGCGTACGT
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--313--7331Chr07:27017612..27017636 (25 bp)
GTGCACGCGCCCAGGGTGCTCATGA
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--911--4131Chr07:27017605..27017629 (25 bp)
CGCCCAGGGTGCTCATGATACTCAG
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--41--1071Chr07:27017600..27017624 (25 bp)
AGGGTGCTCATGATACTCAGCCCGC
LOC_Os07g45290
OsAffx.22543.1.S1_x_at--802--9611Chr07:27017593..27017617 (25 bp)
TCATGATACTCAGCCCGCAGTTCGG
LOC_Os07g45290
Target Sequence 
GGAGTGGCAGGAACGTGCCCGCCGCGAGGTCGTCGCCGTCTGCGGCCGTGGCGACCTCCCCACCAAGGACCACCTCCCCA
AGCTCAAAACCCTCGGGATGATCTTGAACGAGACGCTGAGGCTGTACCCGCCGGCGGTGGCGATGATACGGACGGCGAAG
GAGGACGTGGAGCTGGGCGGGTGCGTGGTGCCGGCGGGGACGGAGGTGATGATCCCGATCATGGCCGTCCACCACGACGC
GGCGGCGTGGGGCGACGACGCCGCGGAGTTCAACCCGGCGAGGTTCGCCGCCGACGACGACGGCGGCCGGCGCCGCCACC
CGATGGCGTTCATGCCGTTCGGCGGCGGCGCGCGGGTGTGCATCGGCCAGAACATGGCGCTCATGGAGGCCAAGGTGGCG
CTCGCCGTCGTCCTGCGGCGCTTCGAGTTCCGGCTATCGCCGGCGTACGTGCACGCGCCCAGGGTGCTCATGATACTCAG
CCCGCAGTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22543.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis