Browse Element(s) Details

OsAffx.22608.3.S1_at

Description

tigr:9634.m00095
TID=OsAffx.22608.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01960	11/11	hypothetical protein
LOC_Os10g02090	4/11	retrotransposon protein, putative, LINE subclass
LOC_Os05g44280	3/11	retrotransposon protein, putative, LINE subclass
LOC_Os09g32980	3/11	retrotransposon protein, putative, LINE subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01910	OsAffx.22610.1.S1_at	11/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01910	Os.50533.1.S1_at	1/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01920	OsAffx.22609.1.S1_x_at	11/11	6	+	510856..511805	Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01920	OsAffx.18574.1.S1_x_at	1/11	6	+	510856..511805	Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_x_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.1.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.53217.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.43567.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.38172.1.S1_x_at	3/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01950	OsAffx.22608.1.S1_at	11/11	6	+	529833..531434	phosphoglycerate mutase family protein, expressed
LOC_Os06g01960	OsAffx.22608.3.S1_x_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	OsAffx.22608.3.S1_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	Os.4403.1.A1_x_at	4/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01966	Os.4404.1.S1_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01966	Os.4404.1.S1_s_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01972	Os.11580.1.S1_at	10/11	6	+	545505..549383	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01980	Os.4407.1.S1_at	11/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01980	Os.4407.2.S1_at	10/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01990	Os.44850.1.S1_at	11/11	6	+	554637..555548	HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.22608.3.S1_at--573--89	1	Chr06:532887..532911 (25 bp)	AGGCCCTAGTCGAGCAGTCTGTCTC	LOC_Os06g01960
OsAffx.22608.3.S1_at--398--1007	2	Chr12:1578731..1578753 (23 bp)	TAGTCGAGCAGTCTGTCTCTGACAT	NONE
OsAffx.22608.3.S1_at--671--115	2	Chr12:1578730..1578753 (24 bp)	AGTCGAGCAGTCTGTCTCTGACATG	NONE
OsAffx.22608.3.S1_at--1042--407	2	Chr12:1578727..1578751 (25 bp)	CGAGCAGTCTGTCTCTGACATGTTC	NONE
OsAffx.22608.3.S1_at--286--121	5	Chr12:19235876..19235900 (25 bp)	AGTTTCTTCTTATCTGGGATGCTGC	NONE
OsAffx.22608.3.S1_at--68--1033	5	Chr12:19235878..19235902 (25 bp)	TTTCTTCTTATCTGGGATGCTGCGC	NONE
OsAffx.22608.3.S1_at--210--1057	5	Chr12:19235879..19235903 (25 bp)	TTCTTCTTATCTGGGATGCTGCGCT	NONE
OsAffx.22608.3.S1_at--241--799	3	Chr12:19235892..19235916 (25 bp)	GGATGCTGCGCTTCGAATTCAGCTC	NONE
OsAffx.22608.3.S1_at--211--63	3	Chr12:19235894..19235918 (25 bp)	ATGCTGCGCTTCGAATTCAGCTCTC	NONE
OsAffx.22608.3.S1_at--352--915	3	Chr12:19235898..19235922 (25 bp)	TGCGCTTCGAATTCAGCTCTCGCCG	NONE
OsAffx.22608.3.S1_at--810--491	4	Chr12:19235901..19235925 (25 bp)	GCTTCGAATTCAGCTCTCGCCGGGT	NONE

Target Sequence

AGGCCCTAGTCGAGCAGTCTGTCTCTGACATGTTCGAGGCGTCCACCTTCTTCGTGCCGGGGGATGGTGAATCTATGCTC
TTCTGGACTGACCATTGGATTGATGGAGGCCGCTCAGTGGCCTCCTTGGCTCCTGACCTCCTCTTTGCTGTGCCACAGCG
CCTCCGTTCGCGCACGGTTGCTTCTGGCCTGGCGAACAACTCTTGGGTTTCGGACATCCACGGGGCCCTCACTGTCCCTG
TCATCTCCCAGTTTCTTCTTATCTGGGATGCTGCGCTTCGAATTCAGCTCTCGCCGGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis