Browse Element(s) Details


OsAffx.22653.1.S1_at

Description tigr:9631.m05746
TID=OsAffx.22653.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5845011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58400Os.30977.1.S1_at11/113+33217856..33220100expressed protein
LOC_Os03g58410Os.30255.1.S1_at10/113+33220568..33221590PRA1 family protein, expressed
LOC_Os03g58420OsAffx.25753.1.S1_at11/113+33225890..33227417WRKY DNA binding domain containing protein, expressed
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22653.1.S1_at--883--8971Chr03:33239938..33239962 (25 bp)
TGAAGCCCCTTGCAACATCAGACGA
LOC_Os03g58450
OsAffx.22653.1.S1_at--767--1731Chr03:33239906..33239930 (25 bp)
ACCATCATCCTCTTCTCGTATAGAT
LOC_Os03g58450
OsAffx.22653.1.S1_at--265--4411Chr03:33239854..33239873 (20 bp)
GCCACCACGGGCTGTTTGGTACTAG
LOC_Os03g58450
OsAffx.22653.1.S1_at--854--331Chr03:33239602..33239626 (25 bp)
ATACAGGCATTGTGGCAGTCGGCGA
LOC_Os03g58450
OsAffx.22653.1.S1_at--61--8471Chr03:33239548..33239572 (25 bp)
TGGCGTTCCCTCACTTGGATATGTG
LOC_Os03g58450
OsAffx.22653.1.S1_at--638--8571Chr03:33239533..33239557 (25 bp)
TGGATATGTGCCTTCTCGTCCTGGT
LOC_Os03g58450
OsAffx.22653.1.S1_at--763--9271Chr03:33239515..33239539 (25 bp)
TCCTGGTCGTTGCTGCTTGGTTAGA
LOC_Os03g58450
OsAffx.22653.1.S1_at--966--1051Chr03:33239160..33239184 (25 bp)
AGGTGGATCCCATTAGCGGTGGCAA
LOC_Os03g58450
OsAffx.22653.1.S1_at--909--131Chr03:33239149..33239173 (25 bp)
ATTAGCGGTGGCAACCCTAAGGGCG
LOC_Os03g58450
OsAffx.22653.1.S1_at--260--6151Chr03:33239098..33239122 (25 bp)
GAGGTTATCCTCAGCGACAGTGGTG
LOC_Os03g58450
OsAffx.22653.1.S1_at--265--1331Chr03:33238985..33239009 (25 bp)
AGAGGATCCTTACGACAGTGACGGC
LOC_Os03g58450
Target Sequence 
TGAAGCCCCTTGCAACATCAGACGACTTGGACACCATCATCCTCTTCTCGTATAGATGGCCCCTTCCATCGGCCATGACC
TCAACGAGAGCCACCACGGGCTGTTTGGTACTAGGAGGTATCAATGATGGTAAAATTCCTTCTGAAAGATACAGGCATTG
TGGCAGTCGGCGAGGCGCGACACGAGCTGATGAGGCCAGATCTGGCGTTCCCTCACTTGGATATGTGCCTTCTCGTCCTG
GTCGTTGCTGCTTGGTTAGAGCGGTTCTTGGGGAGGAAGAGGCAGAGGTGGATCCCATTAGCGGTGGCAACCCTAAGGGC
GGCGGAGGCATGGGATTCCTGGTGGAAGAGGTTATCCTCAGCGACAGTGGTGGAGGACTGAGATTTCGACAAAAATATGT
GGACTCTAGCAGAGGTGGCGGCCCTAGGGGTGGTGGCGGGCTGGGAGTCTGGGAGGCAGAAGAGGATCCTTACGACAGTG
ACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis