Browse Element(s) Details


OsAffx.22659.1.A1_at

Description gb:NM_184980.1
DB_XREF= gi:34897045
TID=OsAffx.22659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0010I09.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g631502/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63100NANA1+36891035..36896658retrotransposon protein, putative, unclassified
LOC_Os01g63110Os.28943.1.S1_x_at3/111+36897278..36898858retrotransposon protein, putative, unclassified
LOC_Os01g63120NANA1+36902994..36907445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63130Os.27691.2.S1_x_at1/111+36907695..36908836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63140NANA1+36912147..36913010retrotransposon protein, putative, unclassified
LOC_Os01g63150Os.42422.1.S1_at11/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.3.S1_x_at6/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.22659.1.A1_at2/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.1.S1_x_at1/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63160Os.30620.1.S1_at11/111+36933384..36934984Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22659.1.A1_at--83--7117Chr10:20171002..20171022 (21 bp)
GTCACGTAGATGCTCTAGCTCGCCC
NONE
OsAffx.22659.1.A1_at--861--18930Chr11:22756763..22756786 (24 bp)
ACGTAGATGCTCTAGCTCGCCCGAA
NONE
OsAffx.22659.1.A1_at--31--63527Chr11:22756767..22756786 (20 bp)
GATGCTCTAGCTCGCCCGAACTGAT
NONE
OsAffx.22659.1.A1_at--738--4151Chr03:32250822..32250846 (25 bp)
CGCCGTCGAACTCCATCCGGTGAAT
NONE
OsAffx.22659.1.A1_at--1035--7211Chr03:32250818..32250842 (25 bp)
GTCGAACTCCATCCGGTGAATCCAA
NONE
OsAffx.22659.1.A1_at--770--2531Chr03:32250814..32250838 (25 bp)
AACTCCATCCGGTGAATCCAAGCCG
NONE
OsAffx.22659.1.A1_at--280--9232Chr11:24345016..24345351 (25 bp)
TCCATCCGGTGAATCCAAGCCGTTG
NONE
OsAffx.22659.1.A1_at--759--10571Chr03:32250771..32250795 (25 bp)
TTCTCCCTCATCATTCCGGTGTACA
NONE
OsAffx.22659.1.A1_at--924--7172Chr02:32795910..32795934 (25 bp)
GTCGTCGCACGGTGTCCCGGAGAAA
NONE
OsAffx.22659.1.A1_at--836--17512Chr10:2707234..2707258 (25 bp)
ACCTCGGCACGACCGGATCGGCTGA
NONE
OsAffx.22659.1.A1_at--848--5791Chr03:32250607..32250631 (25 bp)
GACCGGATCGGCTGACCCCGGTCAG
NONE
Target Sequence 
GTCACGTAGATGCTCTAGCTCGCCCGAACTGATCTCCCGTCGCACCGTCGCCGTTTCCATCTTCTCTCGCCGCCGGATGC
CGCCGCCGCAATCCGCCGCCGTCGAACTCCATCCGGTGAATCCAAGCCGTTGGCTCGCTCCCTCTCGTTCTCCCTCATCA
TTCCGGTGTACACCCCGTCGCCCCTCGTCGTCGCACGGTGTCCCGGAGAAACCGCCGCTGCCCGCCGTCCATTCGCAGCC
GGCGCCTTCGTCTTCCTCCAGCCGGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGGTGCCACCTCGGCACGACCGGATC
GGCTGACCCCGGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22659.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis