Browse Element(s) Details


OsAffx.22940.5.S1_at

Description tigr:9629.m01406
TID=OsAffx.22940.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5074011/11Transposable element protein, putative, MuDR
LOC_Os01g6109011/11transposon protein, putative, Mutator sub-class
LOC_Os11g3588011/11transposon protein, putative, Mutator sub-class
LOC_Os01g1204011/11Transposable element protein, putative, MuDR
LOC_Os07g3431011/11Transposable element protein, putative, MuDR
LOC_Os08g0366011/11transposon protein, putative, Mutator sub-class
LOC_Os06g4190011/11transposon protein, putative, Mutator sub-class
LOC_Os03g5569011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g3258011/11Transposable element protein, putative, MuDR
LOC_Os12g0467011/11transposon protein, putative, Mutator sub-class
LOC_Os11g3308011/11transposon protein, putative, Mutator sub-class
LOC_Os01g5422011/11transposon protein, putative, Mutator sub-class
LOC_Os12g3957011/11Transposable element protein, putative, MuDR
LOC_Os05g4076010/11Transposable element protein, putative, MuDR
LOC_Os02g2933010/11transposon protein, putative, Mutator sub-class
LOC_Os01g2725010/11transposon protein, putative, Mutator sub-class
LOC_Os08g0545010/11transposon protein, putative, Mutator sub-class
LOC_Os06g2021010/11transposon protein, putative, Mutator sub-class
LOC_Os08g4114010/11hypothetical protein
LOC_Os03g137109/11transposon protein, putative, Mutator sub-class
LOC_Os07g133909/11Transposable element protein, putative, MuDR
LOC_Os05g068509/11calcineurin-like phosphoesterase family protein, putative
LOC_Os07g302309/11transposon protein, putative, Mutator sub-class
LOC_Os06g444809/11transposon protein, putative, Mutator sub-class
LOC_Os02g275109/11transposon protein, putative, Mutator sub-class
LOC_Os08g068209/11transposon protein, putative, Mutator sub-class
LOC_Os01g142909/11hypothetical protein
LOC_Os11g062808/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g332208/11Transposable element protein, putative, MuDR
LOC_Os03g282048/11transposon protein, putative, Mutator sub-class
LOC_Os02g462308/11transposon protein, putative, Mutator sub-class
LOC_Os01g511807/11transposon protein, putative, Mutator sub-class
LOC_Os01g218407/11transposon protein, putative, Mutator sub-class
LOC_Os02g418707/11Transposable element protein, putative, MuDR
LOC_Os04g538207/11transposon protein, putative, Mutator sub-class
LOC_Os04g563807/11transposon protein, putative, Mutator sub-class
LOC_Os01g439707/11transposon protein, putative, Mutator sub-class
LOC_Os01g402307/11transposon protein, putative, Mutator sub-class
LOC_Os01g644207/11hypothetical protein
LOC_Os05g357507/11hypothetical protein
LOC_Os06g095807/11Transposable element protein, putative, MuDR
LOC_Os09g376307/11Transposable element protein, putative, MuDR
LOC_Os02g099507/11transposon protein, putative, Mutator sub-class
LOC_Os01g499507/11transposon protein, putative, Mutator sub-class
LOC_Os01g477907/11transposon protein, putative, Mutator sub-class
LOC_Os05g459707/11transposon protein, putative, Mutator sub-class
LOC_Os07g422107/11transposon protein, putative, Mutator sub-class
LOC_Os02g520506/11transposon protein, putative, Mutator sub-class
LOC_Os02g466306/11SWIM zinc finger family protein
LOC_Os01g184805/11transposon protein, putative, Mutator sub-class
LOC_Os09g283305/11transposon protein, putative, Mutator sub-class
LOC_Os03g190505/11SWIM zinc finger family protein
LOC_Os01g352205/11transposon protein, putative, Mutator sub-class
LOC_Os07g057705/11transposon protein, putative, Mutator sub-class
LOC_Os09g124205/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g221644/11transposon protein, putative, Mutator sub-class
LOC_Os11g442404/11Transposable element protein, putative, MuDR
LOC_Os11g430604/11transposon protein, putative, Mutator sub-class
LOC_Os03g053603/11retrotransposon protein, putative, unclassified
LOC_Os02g459603/11transposon protein, putative, Mutator sub-class
LOC_Os01g743803/11hypothetical protein
LOC_Os12g317293/11Transposable element protein, putative, MuDR
LOC_Os10g426003/11transposon protein, putative, Mutator sub-class
LOC_Os01g563403/11hypothetical protein
LOC_Os01g718903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g614602/11hypothetical protein
LOC_Os08g366702/11hypothetical protein
LOC_Os09g389002/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g262042/11transposon protein, putative, Mutator sub-class
LOC_Os11g091202/11hypothetical protein
LOC_Os02g184402/11SWIM zinc finger family protein
LOC_Os01g571802/11hypothetical protein
LOC_Os08g396201/11transposon protein, putative, Mutator sub-class
LOC_Os06g061101/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50750Os.7939.1.S1_at11/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50750Os.32943.2.S1_x_at1/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50760NANA5+29023326..29023754hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22940.5.S1_at--224--761147Chr12:24049143..24049166 (24 bp)
GGGCAACCTCTTCATATCTTCTTTC
NONE
OsAffx.22940.5.S1_at--489--823145Chr12:24049143..24049167 (25 bp)
GGCAACCTCTTCATATCTTCTTTCC
NONE
OsAffx.22940.5.S1_at--99--377145Chr12:24049149..24049173 (25 bp)
CTCTTCATATCTTCTTTCCCACTAG
NONE
OsAffx.22940.5.S1_at--262--1055104Chr12:24049152..24049176 (25 bp)
TTCATATCTTCTTTCCCACTAGCAC
NONE
OsAffx.22940.5.S1_at--515--101572Chr11:20575722..20575746 (25 bp)
TATCTTCTTTCCCACTAGCACACAA
LOC_Os11g35880
OsAffx.22940.5.S1_at--485--43171Chr12:9449279..9449303 (25 bp)
CCACTAGCACACAACACACGAAAAT
NONE
OsAffx.22940.5.S1_at--789--20170Chr12:9449281..9449305 (25 bp)
ACTAGCACACAACACACGAAAATGG
NONE
OsAffx.22940.5.S1_at--1005--21733Chr11:20575746..20575770 (25 bp)
ACACACGAAAATGGAAGCGCCATTC
LOC_Os11g35880
OsAffx.22940.5.S1_at--408--46334Chr11:20575793..20576015 (25 bp)
GCGATCCTTTTGCTGACATATCGTC
LOC_Os11g35880
OsAffx.22940.5.S1_at--489--63723Chr11:20575795..20576017 (25 bp)
GATCCTTTTGCTGACATATCGTCCA
LOC_Os11g35880
OsAffx.22940.5.S1_at--668--5730Chr11:20575796..20576018 (25 bp)
ATCCTTTTGCTGACATATCGTCCAA
LOC_Os11g35880
Target Sequence 
GGGCAACCTCTTCATATCTTCTTTCCCACTAGCACACAACACACGAAAATGGAAGCGCCATTCCTTGAGCGTCTCAACTG
GTAAAGCGATCCTTTTGCTGACATATCGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22940.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis