Browse Element(s) Details


OsAffx.22946.1.S1_at

Description gb:NM_183467.1
DB_XREF= gi:34894061
GEN=P0436E04.15
TID=OsAffx.22946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0436E04.15 (P0436E04.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0146010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g268005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g202003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g046101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g229001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed
LOC_Os01g01484Os.809.1.A1_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.37961.1.S1_s_at11/111+245523..253674Light-mediated development protein DET1, putative, expressed
LOC_Os01g01484Os.27455.1.S1_x_at2/111+245523..253674Light-mediated development protein DET1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22946.1.S1_at--149--3531Chr01:229470..229566 (25 bp)
CATCCACCCTCTCAGTGCTTGTGGG
NONE
OsAffx.22946.1.S1_at--780--1535Chr11:12687970..12687994 (25 bp)
AGCATGCTTGTGAGGAGGCCGCCCT
LOC_Os11g22900
OsAffx.22946.1.S1_at--851--872Chr11:11652360..11652384 (25 bp)
ATGGCCCATCTGAGGGAGCTGCATG
LOC_Os11g20200
OsAffx.22946.1.S1_at--1131--7631Chr01:229390..229414 (25 bp)
GGGAGCTGCATGACGACACTCTGAA
LOC_Os01g01460
OsAffx.22946.1.S1_at--616--9051Chr01:229384..229408 (25 bp)
TGCATGACGACACTCTGAACGCCAC
LOC_Os01g01460
OsAffx.22946.1.S1_at--962--1712Chr04:15633307..15633331 (25 bp)
ACCAGCACCTTCAAGTCAGCTTGGG
LOC_Os04g26800
OsAffx.22946.1.S1_at--544--6011Chr01:229294..229318 (25 bp)
GAGAGAACGATGTCACCTTCGGCCA
LOC_Os01g01460
OsAffx.22946.1.S1_at--352--1732Chr11:11652483..11652507 (25 bp)
ACCTTCGGCCACATGAGTGACGTGA
LOC_Os11g20200
OsAffx.22946.1.S1_at--408--4432Chr04:15633220..15633244 (25 bp)
GCCATGCTCCACAAGGCAACCAAGA
LOC_Os04g26800
OsAffx.22946.1.S1_at--156--5152Chr04:15633205..15633229 (25 bp)
GCAACCAAGAGGCTCAACGACCAGA
LOC_Os04g26800
OsAffx.22946.1.S1_at--359--6212Chr04:15633197..15633221 (25 bp)
GAGGCTCAACGACCAGAAGCTTGTG
LOC_Os04g26800
Target Sequence 
CATCCACCCTCTCAGTGCTTGTGGGGGCACATTTGAGCATGCTTGTGAGGAGGCCGCCCTCAGGGTGATGGCCCATCTGA
GGGAGCTGCATGACGACACTCTGAACGCCACCGCCTACCGCTTCCATCCTCGCCGCGGTTCCAGCTCCAACACCAGCACC
TTCAAGTCAGCTTGGGGAGAGAACGATGTCACCTTCGGCCACATGAGTGACGTGATGGAGGGCTACGACAAGCTGCACGC
CATGCTCCACAAGGCAACCAAGAGGCTCAACGACCAGAAGCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis