Browse Element(s) Details


OsAffx.22947.5.S1_at

Description gb:NM_188116.1
DB_XREF= gi:34903315
TID=OsAffx.22947.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1712011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g311604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g255903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g182002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g383202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g456302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g505002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g293802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g044902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g222402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g332502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g152101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g517701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g262601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein
LOC_Os01g17080OsAffx.22179.1.S1_at11/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17080OsAffx.23752.1.S1_at5/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17090OsAffx.2023.1.S1_at11/111+9824992..9825333hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_s_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_x_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22947.5.S1_at--823--632Chr06:18104008..18104032 (25 bp)
ATGCATCTCGCCAAGGGTTAGGGTG
LOC_Os06g31160
OsAffx.22947.5.S1_at--1084--9012Chr06:18104009..18104033 (25 bp)
TGCATCTCGCCAAGGGTTAGGGTGT
LOC_Os06g31160
OsAffx.22947.5.S1_at--386--452Chr06:18104012..18104036 (25 bp)
ATCTCGCCAAGGGTTAGGGTGTGTG
LOC_Os06g31160
OsAffx.22947.5.S1_at--428--951Chr01:9837401..9837425 (25 bp)
AGGGTTAGGGTGTGTGGTGATGCAA
LOC_Os01g17120
OsAffx.22947.5.S1_at--822--2512Chr11:14095192..14095598 (25 bp)
AACTACCCGACCCACGATCTGAAAT
LOC_Os11g25590
OsAffx.22947.5.S1_at--928--9951Chr01:9837322..9837346 (25 bp)
TACCCGACCCACGATCTGAAATTGG
LOC_Os01g17120
OsAffx.22947.5.S1_at--665--1791Chr01:9837321..9837345 (25 bp)
ACCCGACCCACGATCTGAAATTGGC
LOC_Os01g17120
OsAffx.22947.5.S1_at--965--3651Chr01:9837206..9837230 (25 bp)
CTTCACCCAAGCTGATCTGAATCTC
LOC_Os01g17120
OsAffx.22947.5.S1_at--564--3351Chr01:9837203..9837227 (25 bp)
CACCCAAGCTGATCTGAATCTCCGA
LOC_Os01g17120
OsAffx.22947.5.S1_at--337--45514Chr11:14095548..14095776 (25 bp)
GCCCACACTGGTGGATACCAAAATG
LOC_Os11g25590
OsAffx.22947.5.S1_at--1006--19519Chr11:14095554..14095782 (25 bp)
ACTGGTGGATACCAAAATGTACCAA
LOC_Os11g25590
Target Sequence 
ATGCATCTCGCCAAGGGTTAGGGTGTGTGGTGATGCAAGATGGCAAAGTGGTTGCTTATGCTTCACGTCAGTTGCGTCCT
CATGAAGGCAACTACCCGACCCACGATCTGAAATTGGCCGCAGTTGTTCATGCTTTAAAGATCTGGCGGCACTATCTCAT
CGGTAACCGTTGTGAGGTATATACAGATCACAAAAGTCTAAAGTACATCTTCACCCAAGCTGATCTGAATCTCCGACAGC
GAAGATGGTTGGAGCTAATTAAAGATTATGATATGGGAATACACTATTATCCCGGCAAGGCTAATGTGGTAGCAGATGCC
TTGAGCAGGAAGAGCTACTGCAACGTCGCATGGGTAGAGGAACTATGCTGTGAGGTTCAACGTGATTTGGAACATCTGAA
CCTTGGTATAGTTGAGCACGGATTTGTGGCTGCCCTAGTGGCACAGCCCACACTGGTGGATACCAAAATGTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22947.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis