Browse Element(s) Details

OsAffx.22955.1.S1_x_at

Description

gb:AK121120.1
DB_XREF= gi:37990743
TID=OsAffx.22955.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074F07, full insert sequence.
FL= gb:AK121120.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38292	11/11	Chloroplast ATP synthase a chain precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38210	OsAffx.26050.13.S1_x_at	5/11	10	+	20135104..20135529	NAD, putative
LOC_Os10g38229	Os.26751.1.S1_s_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229	OsAffx.32214.1.S1_x_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_x_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_s_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	Os.26751.2.S1_at	7/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270	OsAffx.30475.3.S1_s_at	11/11	10	+	20148368..20149879	ATP synthase alpha chain, putative, expressed
LOC_Os10g38292	OsAffx.22955.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.22955.2.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32209.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.26770.2.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32208.1.S1_x_at	10/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_x_at	6/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314	NA	NA	10	+	20155218..20156398	Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340	Os.9013.1.S1_at	11/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340	Os.46634.1.S1_x_at	1/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350	Os.46635.1.S1_x_at	11/11	10	+	20163648..20164516	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360	Os.13015.1.S1_at	10/11	10	+	20168320..20169412	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370	OsAffx.22848.4.S1_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370	OsAffx.22848.4.S1_x_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.22955.1.S1_x_at--116--275	4	Chr10:10508793..10508817 (25 bp)	AAGAACCATAGCATTTCGCGACCTA	NONE
OsAffx.22955.1.S1_x_at--64--155	4	Chr10:10508802..10508826 (25 bp)	AGCATTTCGCGACCTATTGGTAAAT	NONE
OsAffx.22955.1.S1_x_at--954--37	5	Chr10:10508830..10508854 (25 bp)	ATCAACTTTGATTCTCTATAGACCA	NONE
OsAffx.22955.1.S1_x_at--851--483	5	Chr10:10508883..10508907 (25 bp)	GCTAAACTGCTTGAAGTCTAGGCAA	NONE
OsAffx.22955.1.S1_x_at--745--769	5	Chr10:10508912..10508936 (25 bp)	GGGTACTCTTTCTACAACTATATTA	NONE
OsAffx.22955.1.S1_x_at--248--847	8	Chr10:10509045..10509069 (25 bp)	TGCCCTTTTTTATCCAATGCCGAAT	NONE
OsAffx.22955.1.S1_x_at--281--921	5	Chr10:10509057..10509081 (25 bp)	TCCAATGCCGAATCGACGACCTATG	NONE
OsAffx.22955.1.S1_x_at--421--693	7	Chr10:10509120..10509144 (25 bp)	GTAGGAATTCTATCCATTTTCATTT	NONE
OsAffx.22955.1.S1_x_at--418--241	6	Chr10:10509210..10509234 (25 bp)	AAAAAACAACTTTGCTGCCCACGAT	NONE
OsAffx.22955.1.S1_x_at--33--1029	5	Chr10:10509220..10509244 (25 bp)	TTTGCTGCCCACGATAGATTTTTAT	NONE
OsAffx.22955.1.S1_x_at--846--1013	4	Chr04:9102705..9102729 (25 bp)	TATCTAGGCGGAAGAGTCCTCTTAA	NONE

Target Sequence

AAGAACCATAGCATTTCGCGACCTATTGGTAAATCAAATCAACTTTGATTCTCTATAGACCAATAATATGAGACCATTAA
CACGGTTAAAGCTAAACTGCTTGAAGTCTAGGCAAAAGGGGGTACTCTTTCTACAACTATATTAGTATTAGTACCAAATG
CTTTAAACAGGAAATAGCTAATGTAGAATTTATCTGATATAGAACACTCATATCGATAAAATGGTTTGAACTATTTACTA
GAAGGGGCACCCTGCCCTTTTTTATCCAATGCCGAATCGACGACCTATGTATAAAAAAGGAGAAAGTTTTTGGATTTGAA
GAAAAAAGTAGGAATTCTATCCATTTTCATTTTCCATTTTTCTATTTAGTTTTTCTTAATGAAATTGAAAATTTTAACTA
AAGGGCAAATACAAATAAAAAAACAACTTTGCTGCCCACGATAGATTTTTATCTAGGCGGAAGAGTCCTCTTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis