Browse Element(s) Details


OsAffx.22955.2.S1_s_at

Description tigr:9638.m01769
TID=OsAffx.22955.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3829211/11Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g2123011/11ATP synthase subunit C family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38210OsAffx.26050.13.S1_x_at5/1110+20135104..20135529NAD, putative
LOC_Os10g38229Os.26751.1.S1_s_at11/1110+20142839..20145429Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229OsAffx.32214.1.S1_x_at11/1110+20142839..20145429Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248OsAffx.32213.1.S1_x_at11/1110+20146442..20147547Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248OsAffx.32213.1.S1_s_at11/1110+20146442..20147547Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248Os.26751.2.S1_at7/1110+20146442..20147547Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270OsAffx.30475.3.S1_s_at11/1110+20148368..20149879ATP synthase alpha chain, putative, expressed
LOC_Os10g38292OsAffx.22955.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.22955.2.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32209.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.26770.2.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32208.1.S1_x_at10/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_x_at6/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314NANA10+20155218..20156398Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340Os.9013.1.S1_at11/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340Os.46634.1.S1_x_at1/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350Os.46635.1.S1_x_at11/1110+20163648..20164516glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360Os.13015.1.S1_at10/1110+20168320..20169412Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370OsAffx.22848.4.S1_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370OsAffx.22848.4.S1_x_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22955.2.S1_s_at--598--72Chr10:10507794..10507818 (25 bp)
ATTGCTGCTGGATTGGCCGTAGGTC
LOC_Os10g21230
OsAffx.22955.2.S1_s_at--768--4712Chr10:10507800..10507824 (25 bp)
GCTGGATTGGCCGTAGGTCTTGCTT
LOC_Os10g21230
OsAffx.22955.2.S1_s_at--228--8572Chr10:10507802..10507826 (25 bp)
TGGATTGGCCGTAGGTCTTGCTTCT
LOC_Os10g21230
OsAffx.22955.2.S1_s_at--257--1032Chr10:10507814..10507838 (25 bp)
AGGTCTTGCTTCTATTGGGCCTGGA
LOC_Os10g21230
OsAffx.22955.2.S1_s_at--692--9574Chr12:20621503..20621526 (24 bp)
TCTTGCTTCTATTGGGCCTGGAGTT
NONE
OsAffx.22955.2.S1_s_at--865--4475Chr12:20621517..20621541 (25 bp)
GCCTGGAGTTGGTCAAGGTACTGCT
NONE
OsAffx.22955.2.S1_s_at--24--1255Chr12:20621523..20621547 (25 bp)
AGTTGGTCAAGGTACTGCTGCAGGA
NONE
OsAffx.22955.2.S1_s_at--866--7815Chr12:20621527..20621551 (25 bp)
GGTCAAGGTACTGCTGCAGGACAAG
NONE
OsAffx.22955.2.S1_s_at--658--3835Chr12:20621540..20621564 (25 bp)
CTGCAGGACAAGCTGTAGAAGGTAT
NONE
OsAffx.22955.2.S1_s_at--732--8735Chr12:20621553..20621577 (25 bp)
TGTAGAAGGTATTGCGAGACAGCCA
NONE
OsAffx.22955.2.S1_s_at--780--5315Chr12:20621557..20621581 (25 bp)
GAAGGTATTGCGAGACAGCCAGAAG
NONE
Target Sequence 
ATTGCTGCTGGATTGGCCGTAGGTCTTGCTTCTATTGGGCCTGGAGTTGGTCAAGGTACTGCTGCAGGACAAGCTGTAGA
AGGTATTGCGAGACAGCCAGGTACTGCTGCAGGACAAGCTGTAGAAGGTATTGCGAGACAGCCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22955.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis