Browse Element(s) Details


OsAffx.2304.1.S1_s_at

Description tigr:9629.m05019
TID=OsAffx.2304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Auxin Efflux Carrier
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5178011/11Auxin efflux carrier component 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51770Os.39858.1.S1_at11/111+30097029..30100206Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative
LOC_Os01g51800Os.36448.1.S1_at10/111+30110395..30112802expressed protein
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009606biological_processtropism
GO:0009630biological_processgravitropism
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0010082biological_processregulation of root meristem size
GO:0048364biological_processroot development
GO:0005886cellular_componentplasma membrane
GO:0012506cellular_componentvesicle membrane
GO:0016328cellular_componentlateral plasma membrane
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2304.1.S1_s_at--237--851Chr01:30103346..30103487 (25 bp)
ATGGCAATGTTCAGCCTAGGCCTTT
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--660--4451Chr01:30103327..30103351 (25 bp)
GCCTTTTCACTGCTCTACAAACTAA
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--554--4951Chr01:30103268..30103292 (25 bp)
GCATTAGCCATCAGGTTCTTTCTAG
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--283--7891Chr01:30103255..30103279 (25 bp)
GGTTCTTTCTAGGACCAGCACTAAT
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--338--811Chr01:30103232..30103256 (25 bp)
ATGGGTATGTCTTCTTATGCTATTG
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--353--51Chr01:30103083..30103202 (25 bp)
ATTGTACAGGCAGCTCTACCTCAAG
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--177--8211Chr01:30103059..30103083 (25 bp)
GGAATAGTTCCGTTTGTGTTTGCAA
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--384--711Chr01:30102883..30102907 (25 bp)
ATGATGGTTGCAGTTCCTGTGGCGC
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--770--4131Chr01:30102861..30102885 (25 bp)
CGCTGGCTTACTACTTTGCAATGAT
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--228--5051Chr01:30102811..30102835 (25 bp)
GCAGAAGCTAGCCTGATTGTGTTCA
LOC_Os01g51780
OsAffx.2304.1.S1_s_at--893--7271Chr01:30102709..30102733 (25 bp)
GTGCCCTTGGGTTTGTGGTGAACCA
LOC_Os01g51780
Target Sequence 
ATGGCAATGTTCAGCCTAGGCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGATGCTACTAGC
ATTAGCCATCAGGTTCTTTCTAGGACCAGCACTAATGGGTATGTCTTCTTATGCTATTGGAATGCGTGGAGTATTGCTGA
AGATAGCCATTGTACAGGCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAATGTCCAAGCAGAT
ATTCTGAGCACTGCGATAATTGTTGGCATGATGGTTGCAGTTCCTGTGGCGCTGGCTTACTACTTTGCAATGATCATCCC
AGCTATCAAATAACTATTTGCAGAAGCTAGCCTGATTGTGTTCATTTGAGAAAACAATGACGGCTCGCTGTGGAGAATAA
GTTCAGTTATGAGTGAATATTTTGCTAGACTGTATATATATGTGCCCTTGGGTTTGTGGTGAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2304.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis