Browse Element(s) Details


OsAffx.23101.1.S1_at

Description gb:NM_184184.1
DB_XREF= gi:34895459
GEN=P0037C04.26
TID=OsAffx.23101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0037C04.26 (P0037C04.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0348011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_at8/111+1380448..1381886hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_x_at7/111+1380448..1381886hypothetical protein
LOC_Os01g03452OsAffx.31552.2.S1_at10/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_x_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.3.S1_x_at5/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.1.S1_x_at4/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_x_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.22940.1.S1_s_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452Os.6098.1.A1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.23624.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_x_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03480OsAffx.23101.2.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.2.S1_s_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.1.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03490Os.962.1.S1_at11/111+1401617..1403989heavy metal-associated domain containing protein, expressed
LOC_Os01g03500Os.45460.1.S1_at10/111+1407789..1409895expressed protein
LOC_Os01g03500Os.45460.2.S1_x_at5/111+1407789..1409895expressed protein
LOC_Os01g03510Os.19834.1.S1_at11/111+1410641..141578466 kDa stress protein, putative, expressed
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23101.1.S1_at--520--8971Chr01:1400140..1400164 (25 bp)
TGAAAGCTAGCCGAGTTGATGAAAA
LOC_Os01g03480
OsAffx.23101.1.S1_at--1063--1471Chr01:1400115..1400139 (25 bp)
AGCAAACAGCGACATGACGACCGAT
LOC_Os01g03480
OsAffx.23101.1.S1_at--226--691Chr01:1400102..1400126 (25 bp)
ATGACGACCGATGGCTCTTCCTATC
LOC_Os01g03480
OsAffx.23101.1.S1_at--387--10671Chr01:1400085..1400109 (25 bp)
TTCCTATCCTTCACTGCAATACTGC
LOC_Os01g03480
OsAffx.23101.1.S1_at--174--3851Chr01:1400064..1400088 (25 bp)
CTGCATTGTGTTTTGTGAGTTTTAT
LOC_Os01g03480
OsAffx.23101.1.S1_at--362--10071Chr01:1400040..1400064 (25 bp)
TAGTCTCCAGTACTATGCTGCTGTA
LOC_Os01g03480
OsAffx.23101.1.S1_at--726--9111Chr01:1400025..1400049 (25 bp)
TGCTGCTGTAGACTTTGCTTCACGT
LOC_Os01g03480
OsAffx.23101.1.S1_at--958--5691Chr01:1400015..1400039 (25 bp)
GACTTTGCTTCACGTTATGCAGGAT
LOC_Os01g03480
OsAffx.23101.1.S1_at--204--5571Chr01:1399389..1399413 (25 bp)
GAAAGTACACGTATTGGGCTACACT
LOC_Os01g03480
OsAffx.23101.1.S1_at--409--7591Chr01:1399374..1399398 (25 bp)
GGGCTACACTGTTCCAGTACTGGAG
LOC_Os01g03480
OsAffx.23101.1.S1_at--435--5951Chr01:1399352..1399376 (25 bp)
GAGCACACACACAACACAGTATCAC
LOC_Os01g03480
Target Sequence 
TGAAAGCTAGCCGAGTTGATGAAAAAGCAAACAGCGACATGACGACCGATGGCTCTTCCTATCCTTCACTGCAATACTGC
ATTGTGTTTTGTGAGTTTTATAGTCTCCAGTACTATGCTGCTGTAGACTTTGCTTCACGTTATGCAGGATGCAGCTGGGG
CTATGTCGTATGGAAGGCAGTGGATGGAGTTGCAGCAATAGCATCAGAAAATCAGGAATTCAGGATTGCTACTGGGAGTA
CGAGTCGTCAACTACTGATCGTCCGGAGTGCAGTCGAACAGTGGCTGCAAGATTTCAAGAAAGTACACGTATTGGGCTAC
ACTGTTCCAGTACTGGAGCACACACACAACACAGTATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis