Browse Element(s) Details


OsAffx.23143.3.S1_x_at

Description tigr:9629.m00627
TID=OsAffx.23143.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0698011/11pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g070202/11Pollen proteins Ole e I family protein
LOC_Os01g069902/11Pollen proteins Ole e I family protein
LOC_Os01g070101/11Pollen proteins Ole e I family protein
LOC_Os10g408401/11retrotransposon protein, putative, LINE subclass
LOC_Os01g069601/11Pollen proteins Ole e I family protein
LOC_Os01g069401/11pollen Ole e 1 allergen and extensin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23143.3.S1_x_at--794--5155Chr10:21629914..21630063 (25 bp)
GCAAGCTGCGCGCAAAGGAACACAC
LOC_Os10g40840
OsAffx.23143.3.S1_x_at--73--2931Chr01:3291796..3291820 (25 bp)
AAGGAACACACAGCCTCGAAGGCGT
LOC_Os01g06980
OsAffx.23143.3.S1_x_at--483--1111Chr01:3291750..3291774 (25 bp)
AGTGTCCGTCATTTGCCACGACGCC
LOC_Os01g06980
OsAffx.23143.3.S1_x_at--434--4231Chr01:3291702..3291726 (25 bp)
CCGTCGGGCCGTCGCCAACGATAAT
LOC_Os01g06980
OsAffx.23143.3.S1_x_at--211--2591Chr01:3291686..3291710 (25 bp)
AACGATAATGGCTACTTCCTCGTGG
LOC_Os01g06980
OsAffx.23143.3.S1_x_at--138--4891Chr01:3291597..3291621 (25 bp)
GCTTCGGTTGTTGCCGGACTTCGAA
LOC_Os01g06980
OsAffx.23143.3.S1_x_at--774--7891Chr01:3291592..3291616 (25 bp)
GGTTGTTGCCGGACTTCGAATGCAA
LOC_Os01g06980
OsAffx.23143.3.S1_x_at--587--2494Chr01:3303234..3303258 (25 bp)
AACATCAACTACTCTAGCATTGAGG
LOC_Os01g07020
OsAffx.23143.3.S1_x_at--920--10012Chr01:3294751..3294775 (25 bp)
TAGCATTGAGGGTGCGCCGCTCCGT
LOC_Os01g06990
OsAffx.23143.3.S1_x_at--420--9891Chr01:3291470..3291494 (25 bp)
TACTATAACTTCATGTACGCCACCG
LOC_Os01g06980
OsAffx.23143.3.S1_x_at--1064--10171Chr01:3291467..3291491 (25 bp)
TATAACTTCATGTACGCCACCGGCC
LOC_Os01g06980
Target Sequence 
GCAAGCTGCGCGCAAAGGAACACACAGCCTCGAAGGCGTGAAGCCGCTGCCTAAGGCGGAAGTGTCCGTCATTTGCCACG
ACGCCAACAATCGCGTCATGGTGAGGTGCCGTCGGGCCGTCGCCAACGATAATGGCTACTTCCTCGTGGAGCTCGATGAG
ACCAAAGTCTCCGACTTCTACATGGGCGATCCGCGCAAGGCGTGCTATGTGCGGCTTCGGTTGTTGCCGGACTTCGAATG
CAATAACCCCACAAACATCAACTACTCTAGCATTGAGGGTGCGCCGCTCCGTGACGGTGCGCCGCTCCGTGACGAGGGCA
AGCGGTGGGCCGACCATGGCTACTATAACTTCATGTACGCCACCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23143.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis