Browse Element(s) Details


OsAffx.23197.2.S1_at

Description gb:NM_188387.1
DB_XREF= gi:34903857
TID=OsAffx.23197.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1120010/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23197.2.S1_at--94--637Chr05:28669581..28669700 (25 bp)
ATGATACCTACCAGACGAGGACGGC
NONE
OsAffx.23197.2.S1_at--72--8391Chr01:5998292..5998636 (25 bp)
GGCGACCCGCCGTATCAGCTCAAAG
LOC_Os01g11200
OsAffx.23197.2.S1_at--108--4171Chr01:5998285..5998309 (25 bp)
CGCCGTATCAGCTCAAAGCTTCAAA
LOC_Os01g11200
OsAffx.23197.2.S1_at--1057--3271Chr01:5998272..5998296 (25 bp)
CAAAGCTTCAAATACCACTCCGAGG
LOC_Os01g11200
OsAffx.23197.2.S1_at--523--311Chr01:5998261..5998285 (25 bp)
ATACCACTCCGAGGTGACGCAATGT
LOC_Os01g11200
OsAffx.23197.2.S1_at--727--9271Chr01:5998254..5998278 (25 bp)
TCCGAGGTGACGCAATGTCAGCTGT
LOC_Os01g11200
OsAffx.23197.2.S1_at--304--2991Chr01:5998241..5998265 (25 bp)
AATGTCAGCTGTGAGCCGCTTTTTT
LOC_Os01g11200
OsAffx.23197.2.S1_at--119--7251Chr01:5998215..5998239 (25 bp)
GTCCCGTCCTTGTGTTCAATGTTTC
LOC_Os01g11200
OsAffx.23197.2.S1_at--222--7271Chr01:5998210..5998234 (25 bp)
GTCCTTGTGTTCAATGTTTCCCGAA
LOC_Os01g11200
OsAffx.23197.2.S1_at--6--9731Chr01:5998200..5998224 (25 bp)
TCAATGTTTCCCGAAATTTACGTAG
LOC_Os01g11200
OsAffx.23197.2.S1_at--927--10031Chr01:5998178..5998202 (25 bp)
TAGTTTTTCGAAATTTCGGATCTAT
LOC_Os01g11200
Target Sequence 
ATGATACCTACCAGACGAGGACGGCGACGGCGGCGGCAGAGGACGGGCGTGGCGACGGCGGCGGTAACGGAGGACAGGCG
CGGCGGTGGTGGGGGATGTGCGCGGCGGCGGTGACGGGGGACAGCGACGGCGGCGGTGGGGGATGGGCGCGGCGGCGGCG
GCGGCGGTGGCGGCAAGGGACGGCGACGGCGGCGACCCGCCGTATCAGCTCAAAGCTTCAAATACCACTCCGAGGTGACG
CAATGTCAGCTGTGAGCCGCTTTTTTTGTCCCGTCCTTGTGTTCAATGTTTCCCGAAATTTACGTAGTTTTTCGAAATTT
CGGATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23197.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis