Browse Element(s) Details


OsAffx.23217.1.S1_at

Description tigr:9629.m01215
TID=OsAffx.23217.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial carrier protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1252011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12490Os.22585.1.S1_at11/111+6854024..6857754expressed protein
LOC_Os01g12500NANA1+6860123..6860549hypothetical protein
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005476molecular_functioncarnitine:acyl carnitine antiporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23217.1.S1_at--955--1911Chr01:6877167..6877191 (25 bp)
ACGGGCCCGTGGACATGGCGCGCGA
LOC_Os01g12520
OsAffx.23217.1.S1_at--449--8471Chr01:6877152..6877176 (25 bp)
TGGCGCGCGACATCCTGCGGAAGGA
LOC_Os01g12520
OsAffx.23217.1.S1_at--995--4111Chr01:6877071..6877095 (25 bp)
CGCACGGCGTGTACTTCTGGACGTA
LOC_Os01g12520
OsAffx.23217.1.S1_at--634--7791Chr01:6876938..6876962 (25 bp)
GGTCTGCTGCTACCCGCTCGACGTG
LOC_Os01g12520
OsAffx.23217.1.S1_at--421--9371Chr01:6876921..6876945 (25 bp)
TCGACGTGGTGAAGTCGCGGCTGCA
LOC_Os01g12520
OsAffx.23217.1.S1_at--933--7771Chr01:6876889..6876913 (25 bp)
GGCTACCCGCCGAGGTACCGTGGCA
LOC_Os01g12520
OsAffx.23217.1.S1_at--706--1011Chr01:6876877..6876901 (25 bp)
AGGTACCGTGGCATCGCCGACTGCT
LOC_Os01g12520
OsAffx.23217.1.S1_at--1113--531Chr01:6876865..6876889 (25 bp)
ATCGCCGACTGCTTCCGGCGGAGCG
LOC_Os01g12520
OsAffx.23217.1.S1_at--786--3551Chr01:6876764..6876788 (25 bp)
CATCTTCTCTGCCTACGAGCTGGCA
LOC_Os01g12520
OsAffx.23217.1.S1_at--219--9951Chr01:6876751..6876775 (25 bp)
TACGAGCTGGCACTCCGGTTCTTGG
LOC_Os01g12520
OsAffx.23217.1.S1_at--861--1991Chr01:6876740..6876764 (25 bp)
ACTCCGGTTCTTGGCTAGCAGCAGC
LOC_Os01g12520
Target Sequence 
ACGGGCCCGTGGACATGGCGCGCGACATCCTGCGGAAGGAGGGCGTCCGCGGCATATACCGCGGCCTCGCGGTGACCGCG
CTCCGGGACGCGCCGGCGCACGGCGTGTACTTCTGGACGTACGAGTACGCGCGGGAGCGGCTGCACCCGGGGTGCCGCGG
CCACGGCGGGGAGCAGGAGAGCCTCGCCACCATGCTCGTCTCCGGCGGCCTCGCCGGCGTCGCCAGCTGGGTCTGCTGCT
ACCCGCTCGACGTGGTGAAGTCGCGGCTGCAGGCGCAGGGCTACCCGCCGAGGTACCGTGGCATCGCCGACTGCTTCCGG
CGGAGCGTCAGGGAGGAAGGGCTCCCCGTGCTGTGGCGCGGCCTCGGCACCGCCGTCGCGCGGGCGTTCGTCGTCAACGG
CGCCATCTTCTCTGCCTACGAGCTGGCACTCCGGTTCTTGGCTAGCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis