Browse Element(s) Details


OsAffx.23253.1.S1_at

Description tigr:9629.m01483
TID=OsAffx.23253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g150109/11GTP-binding protein SAR1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048221biological_processrough ER to cis-Golgi vesicle-mediated transport
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005783cellular_componentendoplasmic reticulum
GO:0005829cellular_componentcytosol
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23253.1.S1_at--1062--2011NONE
ACTACTACGCCAAGGGTGCAGGGAA
NONE
OsAffx.23253.1.S1_at--257--7611Chr01:8412034..8412058 (25 bp)
GGGAAATTATGCACGTGTCACGATA
LOC_Os01g15010
OsAffx.23253.1.S1_at--1027--6231Chr01:8412007..8412031 (25 bp)
GATGGCAACAGTATCTTCCAGAGTT
LOC_Os01g15010
OsAffx.23253.1.S1_at--367--6751Chr01:8411985..8412009 (25 bp)
GTTCAGTTCTTGCTTTAAGTCCTGT
LOC_Os01g15010
OsAffx.23253.1.S1_at--1002--10491Chr01:8411971..8411995 (25 bp)
TTAAGTCCTGTTTGGGTCTCCTGGC
LOC_Os01g15010
OsAffx.23253.1.S1_at--544--7791Chr01:8411957..8411981 (25 bp)
GGTCTCCTGGCGCAGTTTACAAATG
LOC_Os01g15010
OsAffx.23253.1.S1_at--237--7711Chr01:8411915..8411939 (25 bp)
GGGTGCCAACATTTTAACTGTGGTG
LOC_Os01g15010
OsAffx.23253.1.S1_at--448--2571Chr01:8411900..8411924 (25 bp)
AACTGTGGTGTTACGAGATGCTCTT
LOC_Os01g15010
OsAffx.23253.1.S1_at--663--311Chr01:8411863..8411887 (25 bp)
ATACCATTGGCATCTTGCTGTCAGA
LOC_Os01g15010
OsAffx.23253.1.S1_at--113--2451Chr01:8411821..8411845 (25 bp)
AAAATCGAATGTTGGCAGTGCAGTC
LOC_Os01g15010
OsAffx.23253.1.S1_at--21--7131NONE
GTCATGGACTAGTCGATGCTGTTGT
NONE
Target Sequence 
ACTACTACGCCAAGGGTGCAGGGAAATTATGCACGTGTCACGATATTGATGGCAACAGTATCTTCCAGAGTTCAGTTCTT
GCTTTAAGTCCTGTTTGGGTCTCCTGGCGCAGTTTACAAATGAGGAAACTGTGGTTATGGGGTGCCAACATTTTAACTGT
GGTGTTACGAGATGCTCTTAATATGATTTCTATACCATTGGCATCTTGCTGTCAGAGAAACAAAGATATGGGGAAAATCG
AATGTTGGCAGTGCAGTCATGGACTAGTCGATGCTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis