Browse Element(s) Details


OsAffx.23284.1.S1_at

Description tigr:9629.m01760
TID=OsAffx.23284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g181308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein
LOC_Os01g18150OsAffx.23285.1.S1_at11/111+10161180..10162283Protein kinase domain containing protein
LOC_Os01g18160OsAffx.10053.1.S1_at7/111+10163039..10163404hypothetical protein
LOC_Os01g18160OsAffx.10053.1.S1_x_at6/111+10163039..10163404hypothetical protein
LOC_Os01g18170Os.7753.1.S1_at11/111+10164723..10165775Nectarin-1 precursor, putative, expressed
LOC_Os01g18180NANA1+10171168..10174361transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18190NANA1+10177478..10179182transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23284.1.S1_at--459--6611NONE
GTTGGTGTTGGCGAACAGTTTGCAA
NONE
OsAffx.23284.1.S1_at--101--7831NONE
GGTCAATTTGCAAGATACTTTTCAG
NONE
OsAffx.23284.1.S1_at--540--3171NONE
CAATTTGCAAGATACTTTTCAGGGC
NONE
OsAffx.23284.1.S1_at--277--10691Chr01:10155146..10155165 (20 bp)
TTGCAAGATACTTTTCAGGGCAACG
LOC_Os01g18130
OsAffx.23284.1.S1_at--428--4251Chr01:10155174..10155198 (25 bp)
CCGGTGTTGGGCTCAACAAGGCAAC
LOC_Os01g18130
OsAffx.23284.1.S1_at--757--7571Chr01:10155378..10155402 (25 bp)
GGGCGTTTTGTGGACTCTGGAGTGT
LOC_Os01g18130
OsAffx.23284.1.S1_at--34--2011Chr01:10155391..10155415 (25 bp)
ACTCTGGAGTGTGAACGCTTCTGAG
LOC_Os01g18130
OsAffx.23284.1.S1_at--200--9472Chr08:19531865..19532313 (25 bp)
TCTGGAGTGTGAACGCTTCTGAGCG
NONE
OsAffx.23284.1.S1_at--8--6131Chr01:10155397..10155421 (25 bp)
GAGTGTGAACGCTTCTGAGCGAATT
LOC_Os01g18130
OsAffx.23284.1.S1_at--895--1832Chr08:19532301..19532325 (25 bp)
ACGCTTCTGAGCGAATTGGTGTAAT
NONE
OsAffx.23284.1.S1_at--470--4132Chr08:19532302..19532326 (25 bp)
CGCTTCTGAGCGAATTGGTGTAATA
NONE
Target Sequence 
GTTGGTGTTGGCGAACAGTTTGCAAGGATTTATGCTGCAAGCTGTAATCTGCACTTTTTTGGTCAATTTGCAAGATACTT
TTCAGGGCAACGTATTGGCTCCGGTGTTGGGCTCAACAAGGCAACAACAACAAAGATTGGGGCGTTTTGTGGACTCTGGA
GTGTGAACGCTTCTGAGCGAATTGGTGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis