Browse Element(s) Details


OsAffx.23333.2.S1_x_at

Description gb:NM_183797.1
DB_XREF= gi:34894721
GEN=OSJNBa0011P19.7
TID=OsAffx.23333.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0011P19.7 (OSJNBa0011P19.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2220910/11hypothetical protein
LOC_Os01g2203910/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22170NANA1+12439508..12446174retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g22180Os.40626.1.S1_at1/111+12448428..12453351retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g22190OsAffx.9860.1.S1_x_at1/111+12456734..12464956transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.14491.2.S1_x_at4/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.47463.1.S1_x_at3/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.41934.1.A1_x_at2/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22209OsAffx.23333.1.S1_at11/111+12470043..12472887hypothetical protein
LOC_Os01g22209OsAffx.23333.2.S1_x_at10/111+12470043..12472887hypothetical protein
LOC_Os01g22220OsAffx.23332.2.A1_at11/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.25889.2.S1_at10/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.1923.1.S1_at1/111+12474474..12477137hypothetical protein
LOC_Os01g22230Os.35123.1.S1_at11/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22230Os.1559.1.S1_x_at2/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22249Os.17722.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.51434.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.38751.1.A1_at4/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_x_at3/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.1559.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.9790.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.1197.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.49802.1.S2_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.916.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23333.2.S1_x_at--898--4452Chr01:12358428..12358452 (25 bp)
GCCTACTACATCTGCTGCGACTGCG
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--89--5412Chr01:12358525..12358549 (25 bp)
GAAGCGTGGAGGACTCTCGCCACCG
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--772--1512Chr01:12358606..12358630 (25 bp)
AGCAGCACGAGACCGTCGTCGACTA
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--753--9412Chr01:12358621..12358645 (25 bp)
TCGTCGACTACCCAGCGCGGGACAA
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--533--7612Chr01:12358651..12358675 (25 bp)
GGGACGTCAAGGAGTGCCCGCACCA
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--467--8372Chr01:12358704..12358728 (25 bp)
GGCGTGCTCTGTTGCGCGGATCTCC
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--754--4172Chr01:12358798..12358822 (25 bp)
CCCAAGGCTGCGTCATGGTCGGCGA
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--5--1872Chr01:12358822..12358846 (25 bp)
ACGACGAGAAGCACCACCGCTGGCT
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--535--4412Chr01:12358851..12358875 (25 bp)
GCCACGGTGCGCGTGAAGATCCATG
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--586--7352Chr01:12358863..12358887 (25 bp)
GTGAAGATCCATGGCATCCCGGACG
LOC_Os01g22039
OsAffx.23333.2.S1_x_at--74--8091NONE
GGACGCGCCGGTGCACTTATGGTAC
NONE
Target Sequence 
GCCTACTACATCTGCTGCGACTGCGACGCGCGCACCCGTGTCGCCACCCCGCCGCCTCCCTCCGGCTCCCTCGACCACCT
CAACTTCCCGCGGCGGCGAAGCGTGGAGGACTCTCGCCACCGCGGCTACTGCCTGGTCGCGCAGGCGCAGCTCCACCCAA
CGTCGACGACCACCACCCAGCAGCACGAGACCGTCGTCGACTACCCAGCGCGGGACAACAAGTGGGACGTCAAGGAGTGC
CCGCACCACCAGCGCGCGATGGGGGGTTGCCACGGCGGCGTGCTCTGTTGCGCGGATCTCCCCTACGGCTTCCTCACCAG
CTGCGTCCCCTTCGCCGACGAGCTCCGCCGCCTGCGCTACGTCGAGCTTCCCCAAGGCTGCGTCATGGTCGGCGACGACG
AGAAGCACCACCGCTGGCTCTTCGCCACGGTGCGCGTGAAGATCCATGGCATCCCGGACGCGCCGGTGCACTTATGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23333.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis