Browse Element(s) Details


OsAffx.23396.1.S1_s_at

Description tigr:9629.m02513
TID=OsAffx.23396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dephospho-CoA kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2588011/11dephospho-CoA kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25839Os.45974.1.A1_at1/111+14634409..14642502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25839Os.41248.4.S1_x_at1/111+14634409..14642502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25839OsAffx.19337.1.S1_at1/111+14634409..14642502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25860NANA1+14646135..14652883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25880OsAffx.23396.1.S1_s_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.23667.1.A1_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.57362.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880OsAffx.23396.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25890NANA1+14673295..14675091retrotransposon protein, putative, unclassified
LOC_Os01g25900NANA1+14675717..14678851retrotransposon protein, putative, unclassified
LOC_Os01g25910OsAffx.19678.1.S1_at10/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.13774.1.S1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.11264.1.S1_s_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910Os.27004.1.A1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25920Os.11829.1.S2_at11/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11829.1.S1_at10/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.38368.1.S1_s_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920OsAffx.18868.5.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11706.1.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25930NANA1+14690301..14691545transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015937biological_processcoenzyme A biosynthesis
GO:0004140molecular_functiondephospho-CoA kinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23396.1.S1_s_at--470--831Chr01:14662857..14662881 (25 bp)
ATGGAGAAATTGACCGAGCTCGCTT
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--64--1791Chr01:14662845..14662869 (25 bp)
ACCGAGCTCGCTTAGGACAGATTGT
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--608--5651Chr01:14662830..14662854 (25 bp)
GACAGATTGTCTTTTCTGACCCGGA
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--764--1811Chr01:14662484..14662826 (25 bp)
ACGCCAAGTTCTAAACCGTCTCCTG
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--1152--7971Chr01:14662405..14662429 (25 bp)
GGATGCAAGGTTATCGTCCTCGACA
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--1029--7251Chr01:14662390..14662414 (25 bp)
GTCCTCGACATTCCTCTGTTGTTTG
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--920--5791Chr01:14662346..14662370 (25 bp)
GACGCACCCTGTTATTGTTGTGTGG
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--10--3111Chr01:14662255..14662279 (25 bp)
AATAGGATCAATGCGCAGCTTGCGT
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--850--8831Chr01:14662200..14662224 (25 bp)
TGATCGACAATTCTGGCACGCTGGA
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--597--10711Chr01:14662147..14662171 (25 bp)
TTGAGGAACGTCTCTGAACCCCTGA
LOC_Os01g25880
OsAffx.23396.1.S1_s_at--108--6151Chr01:14662106..14662130 (25 bp)
GAGGTCTCGGGATGGTCTTTTCTCC
LOC_Os01g25880
Target Sequence 
ATGGAGAAATTGACCGAGCTCGCTTAGGACAGATTGTCTTTTCTGACCCGGAAAAACGCCAAGTTCTAAACCGTCTCCTG
GCTCCACATATTTCATCTGGGATATTTTGGGAGATACTAAAACTGTGGATAAAAGGATGCAAGGTTATCGTCCTCGACAT
TCCTCTGTTGTTTGAGACAAAGATGGACCAATGGACGCACCCTGTTATTGTTGTGTGGGTGAATGAAGCAACCCAGATTG
AGAGGCTAATGTCAAGAGATGGGTGCTCTGAAGAACAAGCTCGGAATAGGATCAATGCGCAGCTTGCGTTGGACTGGAAG
AAGTCACAAGCAGACATTGTGATCGACAATTCTGGCACGCTGGATGAAACCAAAGAAAAGTTTCAGGAAGTGTTGAGGAA
CGTCTCTGAACCCCTGACATGGAAGGAGCGGTTGAGGTCTCGGGATGGTCTTTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23396.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis