Browse Element(s) Details


OsAffx.23416.1.S1_at

Description gb:NM_193841.1
DB_XREF= gi:34914765
GEN=P0493G01.22
TID=OsAffx.23416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (P0493G01.22), mRNA.
PROD=putative glutathione S-transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g273809/11glutathione S-transferase GSTF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23416.1.S1_at--498--571Chr01:15617060..15617084 (25 bp)
ATCCTTTTCGGTAAGATATCTCTAG
LOC_Os01g27380
OsAffx.23416.1.S1_at--810--4111Chr01:15617062..15617086 (25 bp)
CCTTTTCGGTAAGATATCTCTAGGG
LOC_Os01g27380
OsAffx.23416.1.S1_at--763--7611NONE
GGGAAAACTTAGTCTCGTGCAATTG
NONE
OsAffx.23416.1.S1_at--95--5531NONE
GAAAACTTAGTCTCGTGCAATTGCA
NONE
OsAffx.23416.1.S1_at--1000--3271Chr01:15617746..15617770 (25 bp)
CAAAATATATACTCCACTTCGCAAA
LOC_Os01g27380
OsAffx.23416.1.S1_at--527--3111Chr01:15617749..15617773 (25 bp)
AATATATACTCCACTTCGCAAAAGC
LOC_Os01g27380
OsAffx.23416.1.S1_at--130--251Chr01:15617752..15617776 (25 bp)
ATATACTCCACTTCGCAAAAGCGCA
LOC_Os01g27380
OsAffx.23416.1.S1_at--485--1991Chr01:15617756..15617780 (25 bp)
ACTCCACTTCGCAAAAGCGCATCAG
LOC_Os01g27380
OsAffx.23416.1.S1_at--1013--10631Chr01:15617763..15617787 (25 bp)
TTCGCAAAAGCGCATCAGACTTGCT
LOC_Os01g27380
OsAffx.23416.1.S1_at--230--5151Chr01:15617766..15617790 (25 bp)
GCAAAAGCGCATCAGACTTGCTGAA
LOC_Os01g27380
OsAffx.23416.1.S1_at--738--2671Chr01:15617770..15617794 (25 bp)
AAGCGCATCAGACTTGCTGAAGGAA
LOC_Os01g27380
Target Sequence 
ATCCTTTTCGGTAAGATATCTCTAGGGGAAAACTTAGTCTCGTGCAATTGCAAAATATATACTCCACTTCGCAAAAGCGC
ATCAGACTTGCTGAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis