Browse Element(s) Details


OsAffx.23438.1.S1_at

Description tigr:9629.m02764
TID=OsAffx.23438.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g288109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28760OsAffx.4856.1.S1_x_at1/111+16435326..16438787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28770OsAffx.28887.2.S1_x_at2/111+16440198..16441465hypothetical protein
LOC_Os01g28780OsAffx.639.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28780OsAffx.2113.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28790Os.10162.1.S1_at11/111+16457381..16458225expressed protein
LOC_Os01g28790Os.46603.1.A1_x_at1/111+16457381..16458225expressed protein
LOC_Os01g28800OsAffx.23437.1.S1_at11/111+16461601..16462081retrotransposon, putative, centromere-specific
LOC_Os01g28810OsAffx.23438.1.S1_at9/111+16463090..16468000expressed protein
LOC_Os01g28820OsAffx.21110.1.S1_s_at11/111+16471696..16472100hypothetical protein
LOC_Os01g28830OsAffx.11248.1.S1_at11/111+16472672..16474341hypothetical protein
LOC_Os01g28830OsAffx.29962.1.S1_at1/111+16472672..16474341hypothetical protein
LOC_Os01g28840Os.33968.1.S1_at11/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28840Os.5608.3.S1_x_at1/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28850OsAffx.21108.1.S1_at5/111+16483844..16484083hypothetical protein
LOC_Os01g28850OsAffx.21108.1.S1_x_at4/111+16483844..16484083hypothetical protein
LOC_Os01g28870NANA1+16491635..16497790retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23438.1.S1_at--37--9711Chr01:16466092..16466116 (25 bp)
TCAAATGGCTGATAACTCTGGATAT
LOC_Os01g28810
OsAffx.23438.1.S1_at--380--10331Chr01:16466048..16466072 (25 bp)
TTTCACTGGCGAGGAGGCAAGCTCA
LOC_Os01g28810
OsAffx.23438.1.S1_at--561--5071Chr01:16464851..16464875 (25 bp)
GCAGCTGAAGCTTGAGAATGAGAAA
LOC_Os01g28810
OsAffx.23438.1.S1_at--835--5211Chr01:16464815..16464839 (25 bp)
GAATTACGCAATCAAGTTGCAGGAG
LOC_Os01g28810
OsAffx.23438.1.S1_at--108--3491Chr01:16464796..16464820 (25 bp)
CAGGAGTTCAATAGTATATGCAGTA
LOC_Os01g28810
OsAffx.23438.1.S1_at--558--651Chr01:16464779..16464803 (25 bp)
ATGCAGTACTTGTCATATGAGGGCT
LOC_Os01g28810
OsAffx.23438.1.S1_at--738--9591Chr01:16464767..16464791 (25 bp)
TCATATGAGGGCTGAAAATGCTTGC
LOC_Os01g28810
OsAffx.23438.1.S1_at--765--2271NONE
AAATGCTTGCCTTGGAACTGAGATT
NONE
OsAffx.23438.1.S1_at--970--3591NONE
CTTGGAACTGAGATTCAACGCCTTT
NONE
OsAffx.23438.1.S1_at--1142--10131Chr01:16463488..16463512 (25 bp)
TATGCCCGTGCTACAAACCAGGAGA
LOC_Os01g28810
OsAffx.23438.1.S1_at--1117--8051Chr01:16463468..16463492 (25 bp)
GGAGACTGAAGCACAACCTGAAGAA
LOC_Os01g28810
Target Sequence 
TCAAATGGCTGATAACTCTGGATATCCATCAAAGCAAATGAAGGTTTCACTGGCGAGGAGGCAAGCTCAGAATAAGNNNN
NNNNNCAACAAAATGAGCAGCTGAAGCTTGAGAATGAGAAATTGAAGAAAAAGAATTACGCAATCAAGTTGCAGGAGTTC
AATAGTATATGCAGTACTTGTCATATGAGGGCTGAAAATGCTTGCCTTGGAACTGAGATTCAACGCCTTTATGCCCGTGC
TACAAACCAGGAGACTGAAGCACAACCTGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis