Browse Element(s) Details


OsAffx.23469.1.S1_x_at

Description tigr:9629.m02997
TID=OsAffx.23469.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g321409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32080Os.15077.1.S1_a_at11/111+17887607..17891787Thiamine pyrophosphate enzyme, central domain containing protein, expressed
LOC_Os01g32090OsAffx.2129.1.S1_at11/111+17892266..17894322pentatricopeptide, putative, expressed
LOC_Os01g32100Os.47463.1.S1_x_at5/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.14491.2.S1_x_at4/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.41934.1.A1_x_at2/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23469.1.S1_x_at--494--1891Chr01:17916088..17916112 (25 bp)
ACGTTGGCGTCGTCGAGGACTCCGA
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--14--9391Chr01:17916121..17916145 (25 bp)
TCGAGGACTCCGACAGCGGCGTCAG
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--819--951Chr01:17916124..17916148 (25 bp)
AGGACTCCGACAGCGGCGTCAGCGA
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--292--2151Chr01:17916133..17916157 (25 bp)
ACAGCGGCGTCAGCGAAGTACGCCG
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--16--4651Chr01:17916139..17916162 (24 bp)
GCGTCAGCGAAGTACGCCGTCAGGA
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--194--4031Chr01:17916140..17916162 (23 bp)
CGTCAGCGAAGTACGCCGTCAGGAA
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--1127--4391Chr01:17916145..17916570 (25 bp)
GCGAAGTACGCCGTCAGGAATGCAA
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--1110--4071Chr01:17916146..17916571 (25 bp)
CGAAGTACGCCGTCAGGAATGCAAA
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--993--5311Chr01:17916147..17916572 (25 bp)
GAAGTACGCCGTCAGGAATGCAAAT
LOC_Os01g32140
OsAffx.23469.1.S1_x_at--425--2831NONE
AAGTACGCCGTCAGGAATGCAAATG
NONE
OsAffx.23469.1.S1_x_at--591--1171NONE
AGTACGCCGTCAGGAATGCAAATGC
NONE
Target Sequence 
ACGTTGGCGTCGTCGAGGACTCCGACGGCGTCGTCGAGGACTCCGACAGCGGCGTCAGCGAAGTACGCCGTCAGGAATGC
AAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23469.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis