Browse Element(s) Details


OsAffx.23584.1.S1_at

Description gb:NM_192977.1
DB_XREF= gi:34913037
GEN=P0013G02.9
TID=OsAffx.23584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013G02.9 (P0013G02.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g396507/11Programmed cell death protein 2, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23584.1.S1_at--661--5311NONE
GAAGGATAGGGCAGGATCCCAAACT
NONE
OsAffx.23584.1.S1_at--223--6491NONE
GATAGGGCAGGATCCCAAACTTGGT
NONE
OsAffx.23584.1.S1_at--575--5011Chr01:22694863..22694885 (23 bp)
GCAGGATCCCAAACTTGGTTTTGTT
LOC_Os01g39650
OsAffx.23584.1.S1_at--835--6371Chr01:22694859..22694883 (25 bp)
GATCCCAAACTTGGTTTTGTTGTTG
LOC_Os01g39650
OsAffx.23584.1.S1_at--328--2071Chr01:22694851..22694875 (25 bp)
ACTTGGTTTTGTTGTTGGTGTGGCA
LOC_Os01g39650
OsAffx.23584.1.S1_at--905--3591Chr01:22694850..22694874 (25 bp)
CTTGGTTTTGTTGTTGGTGTGGCAC
LOC_Os01g39650
OsAffx.23584.1.S1_at--116--8591Chr01:22694848..22694872 (25 bp)
TGGTTTTGTTGTTGGTGTGGCACAT
LOC_Os01g39650
OsAffx.23584.1.S1_at--1136--10371Chr01:22694845..22694869 (25 bp)
TTTTGTTGTTGGTGTGGCACATGGA
LOC_Os01g39650
OsAffx.23584.1.S1_at--629--10791Chr01:22694843..22694867 (25 bp)
TTGTTGTTGGTGTGGCACATGGAAA
LOC_Os01g39650
OsAffx.23584.1.S1_at--942--7951NONE
GGATCAGTTTGAGATAATGCCACAA
NONE
OsAffx.23584.1.S1_at--592--6431NONE
GATCAGTTTGAGATAATGCCACAAC
NONE
Target Sequence 
GAAGGATAGGGCAGGATCCCAAACTTGGTTTTGTTGTTGGTGTGGCACATGGAAAGGGGAAAAAGTTTGTAGTCGTTGTA
GGAAATCCAGTTACTGTTCAAAGAAGCATCAGGAATTGCATTGGCGTGCAAAGCACAAGAATGAGTGCCATCAAATATCT
GGCTCACATAATGCTTCTGCTATTATGCCAGATGCAGGAAAAGTATTTGCTGGCAATATATGGCCTGAATACATGGTGGT
TGATGAAACCGAAAAGGTTTCTTGTTTTGCTAGTTGTGAGAATAGATCAGAATTGTTGATGGAACAAGGCCAAAGTGAAG
AGGATGACATGACGGCATCATTGATGGATCAGTTTGAGATAATGCCACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis