Browse Element(s) Details


OsAffx.23618.1.S1_at

Description tigr:9629.m03936
TID=OsAffx.23618.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4118011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23618.1.S1_at--733--8751Chr01:23640630..23640654 (25 bp)
TGTACTGGCGTTGCTGGTCGCGGCC
LOC_Os01g41180
OsAffx.23618.1.S1_at--254--4491Chr01:23640605..23640629 (25 bp)
GCCGGCGGTGACGAATTAGCGGCGG
LOC_Os01g41180
OsAffx.23618.1.S1_at--991--7311Chr01:23640537..23640561 (25 bp)
GTGCTTCGACCAGTGCGTGCAGCGC
LOC_Os01g41180
OsAffx.23618.1.S1_at--437--9371Chr01:23640532..23640556 (25 bp)
TCGACCAGTGCGTGCAGCGCGAGGA
LOC_Os01g41180
OsAffx.23618.1.S1_at--1111--1651Chr01:23640517..23640541 (25 bp)
AGCGCGAGGAGTACTGGTTCTGCCA
LOC_Os01g41180
OsAffx.23618.1.S1_at--187--991Chr01:23640511..23640535 (25 bp)
AGGAGTACTGGTTCTGCCAGTTCTC
LOC_Os01g41180
OsAffx.23618.1.S1_at--957--1171Chr01:23640508..23640532 (25 bp)
AGTACTGGTTCTGCCAGTTCTCCTG
LOC_Os01g41180
OsAffx.23618.1.S1_at--948--1951Chr01:23640505..23640529 (25 bp)
ACTGGTTCTGCCAGTTCTCCTGCTA
LOC_Os01g41180
OsAffx.23618.1.S1_at--990--7891Chr01:23640502..23640526 (25 bp)
GGTTCTGCCAGTTCTCCTGCTACCG
LOC_Os01g41180
OsAffx.23618.1.S1_at--1115--4691Chr01:23640385..23640409 (25 bp)
GCGGCCAGATCGACCCGGGCAGCAA
LOC_Os01g41180
OsAffx.23618.1.S1_at--133--4531Chr01:23640346..23640370 (25 bp)
GCCGCGACACGTGCGGCAAGAGCTA
LOC_Os01g41180
Target Sequence 
TGTACTGGCGTTGCTGGTCGCGGCCGCCGGCGGTGACGAATTAGCGGCGGCGGTGGGTAGCAGCAGCAGCATCATGCCGC
CCTGCTTCCACGCGTGCTTCGACCAGTGCGTGCAGCGCGAGGAGTACTGGTTCTGCCAGTTCTCCTGCTACCGCCGGTGC
GGCGCCGGCGCCATCGCCATCGCCATCGCCGCCGGCCGCTTCTCCGGCACCGGCGACTGCGAGCACGCGTGCGCGCTGTC
CATGTGCGGCCAGATCGACCCGGGCAGCAAGATGATGGCCGTGTGCCGCGACACGTGCGGCAAGAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis