Browse Element(s) Details


OsAffx.23753.1.S1_at

Description gb:NM_191755.1
DB_XREF= gi:34910593
GEN=B1131B07.25
TID=OsAffx.23753.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative selenium-binding protein (B1131B07.25), mRNA.
PROD=putative selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5179011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51770Os.39858.1.S1_at11/111+30097029..30100206Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative
LOC_Os01g51800Os.36448.1.S1_at10/111+30110395..30112802expressed protein
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23753.1.S1_at--327--9911Chr01:30109400..30109424 (25 bp)
TACTCAATGCGTCACGGATCCACAA
LOC_Os01g51790
OsAffx.23753.1.S1_at--1076--4811Chr01:30109458..30109482 (25 bp)
GCTCATGGCGATCGAGTCCAAGAAT
LOC_Os01g51790
OsAffx.23753.1.S1_at--857--1131Chr01:30109472..30109496 (25 bp)
AGTCCAAGAATGATGCCGCCCATGT
LOC_Os01g51790
OsAffx.23753.1.S1_at--1057--431Chr01:30109510..30109534 (25 bp)
ATCTATGCAGACTCGCAGAACTGGA
LOC_Os01g51790
OsAffx.23753.1.S1_at--988--2311Chr01:30109581..30109605 (25 bp)
AAAGGTGCCTGGGTGTAGTGCCATT
LOC_Os01g51790
OsAffx.23753.1.S1_at--871--6191Chr01:30109640..30109664 (25 bp)
GAGGCAAGACACACCCAAGACACAA
LOC_Os01g51790
OsAffx.23753.1.S1_at--417--6211Chr01:30109704..30109728 (25 bp)
GAGGCTGCAAGGGTACATTGCGAAC
LOC_Os01g51790
OsAffx.23753.1.S1_at--582--5351Chr01:30109768..30109792 (25 bp)
GAAGATGCAATCTCCTTGCATAGTG
LOC_Os01g51790
OsAffx.23753.1.S1_at--507--71Chr01:30109804..30109828 (25 bp)
ATTGCATTTGGCCTAGTCGCGTTGC
LOC_Os01g51790
OsAffx.23753.1.S1_at--1142--9331Chr01:30109820..30109844 (25 bp)
TCGCGTTGCCGGAAGACATGGAGAT
LOC_Os01g51790
OsAffx.23753.1.S1_at--1121--8871Chr01:30109872..30109896 (25 bp)
TGAGGACTGCCATGATTATACCAAG
LOC_Os01g51790
Target Sequence 
TACTCAATGCGTCACGGATCCACAAAAACGTTGAACTGGGGAAATATGCAATGGATAAGCTCATGGCGATCGAGTCCAAG
AATGATGCCGCCCATGTCCTGCTCTCTAACATCTATGCAGACTCGCAGAACTGGAAGGGTGTCAGCAATGTTCGGAACAT
GATGAAGGCCAAGGGAGTGAAAAAGGTGCCTGGGTGTAGTGCCATTGAGGTTGGTGGCAAGGTGCATGAGTTCTTTGTTG
GAGGCAAGACACACCCAAGACACAAGGAGATCGAGATGATGCTTGCAGAGATGAATCAGAGGCTGAGGCTGCAAGGGTAC
ATTGCGAACACAAAAGAGGTGTTGTTTGATATCGAGGAAGAGGACAAAGAAGATGCAATCTCCTTGCATAGTGAGAAGCT
GGCCATTGCATTTGGCCTAGTCGCGTTGCCGGAAGACATGGAGATTAGGATAGTGAAGAACCTGAGAGTATGTGAGGACT
GCCATGATTATACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis