Browse Element(s) Details


OsAffx.23819.2.S1_x_at

Description tigr:9633.m03967
TID=OsAffx.23819.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclic nucleotide-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4225011/11cation channel family protein, expressed
LOC_Os01g573702/11cation channel family protein, expressed
LOC_Os03g551001/11Cyclic nucleotide-gated ion channel 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed
LOC_Os05g42240OsAffx.4596.1.S1_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42240OsAffx.4596.1.S1_x_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42260OsAffx.15071.1.S1_at11/115+24637663..24638412hypothetical protein
LOC_Os05g42260Os.53296.1.S1_at1/115+24637663..24638412hypothetical protein
LOC_Os05g42270Os.51973.1.S1_at11/115+24641118..24644053Acyltransferase family protein, expressed
LOC_Os05g42280Os.51003.1.S1_at10/115+24646272..24649682expressed protein
LOC_Os05g42280Os.11595.1.S2_at1/115+24646272..24649682expressed protein
LOC_Os05g42290OsAffx.15072.1.S1_at10/115+24652314..24654557Protein ULTRAPETALA2, putative
LOC_Os05g42300Os.48269.1.S1_at11/115+24655369..24659272NAF1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0016020cellular_componentmembrane
GO:0005216molecular_functionion channel activity
GO:0005221molecular_functionintracellular cyclic nucleotide activated cation channel activity
GO:0005222molecular_functionintracellular cAMP activated cation channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0008324molecular_functioncation transporter activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23819.2.S1_x_at--1158--5774Chr05:24632878..24632902 (25 bp)
GACGAGCTGCTGTCGTGGTGCATGA
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--1029--2831Chr05:24632995..24633019 (25 bp)
AAGTACGTGACGCAGCACTTCCGGT
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--951--8931Chr05:24633002..24633026 (25 bp)
TGACGCAGCACTTCCGGTACACCTT
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--921--8473Chr05:24633109..24633133 (25 bp)
TGGCGGCGGTACAAGCACCGCAAGA
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--1087--6171Chr05:24633196..24633220 (25 bp)
GAGGAGAAGCTCAGGCTCTACACCG
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--684--1651Chr05:24633239..24633263 (25 bp)
AGCCCAACCAGGACGACGACTTCTA
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--1128--5771Chr05:24633250..24633274 (25 bp)
GACGACGACTTCTAAATGACTCCTG
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--57--10591Chr05:24633259..24633283 (25 bp)
TTCTAAATGACTCCTGTTGCATCAG
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--738--8811Chr05:24633273..24633297 (25 bp)
TGTTGCATCAGATCAGCTGCCTGTA
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--668--1591Chr05:24633287..24633311 (25 bp)
AGCTGCCTGTACACGGATTCAAGAA
LOC_Os05g42250
OsAffx.23819.2.S1_x_at--804--7611Chr05:24633314..24633338 (25 bp)
GGGAAGCGTTGGGATCTTGTATTTA
LOC_Os05g42250
Target Sequence 
GACGAGCTGCTGTCGTGGTGCATGAGGCGGCCGTTCATGGAGCGGCTGCCGGCGTCGTCGTCGACGCTGGTGACGGCGGA
GAGCACGGAGGCGTTCGGGCTGGAGGCCGGCGACGTCAAGTACGTGACGCAGCACTTCCGGTACACCTTCACCAGCGACA
AGGTGCGGCGCAGCGCGCGGTACTACTCCCACGGGTGGCGGACGTGGGCGGCCGTCGCCGTGCAGCTCGCGTGGCGGCGG
TACAAGCACCGCAAGACGCTCGCCTCGCTCTCCTTCATCCGCCCGCGCAGGCCGCTCTCGCGGTGCTCGTCCCTCGGGGA
GGAGAAGCTCAGGCTCTACACCGCCATCCTCACCTCCCCCAAGCCCAACCAGGACGACGACTTCTAAATGACTCCTGTTG
CATCAGATCAGCTGCCTGTACACGGATTCAAGAATGGGGAAGCGTTGGGATCTTGTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23819.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis