Browse Element(s) Details


OsAffx.23875.1.S1_at

Description gb:NM_190364.1
DB_XREF= gi:34907811
GEN=P0703B11.27
TID=OsAffx.23875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0703B11.27 (P0703B11.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6068011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23875.1.S1_at--269--7391Chr01:35417407..35417431 (25 bp)
GTGAGTTGTACGGTTATCAATGCTC
LOC_Os01g60680
OsAffx.23875.1.S1_at--1047--6991Chr01:35417400..35417424 (25 bp)
GTACGGTTATCAATGCTCTACATGC
LOC_Os01g60680
OsAffx.23875.1.S1_at--858--4811Chr01:35417386..35417410 (25 bp)
GCTCTACATGCTCATATGGTTGCCT
LOC_Os01g60680
OsAffx.23875.1.S1_at--771--9871Chr01:35417382..35417406 (25 bp)
TACATGCTCATATGGTTGCCTGGCT
LOC_Os01g60680
OsAffx.23875.1.S1_at--653--9091Chr01:35417378..35417402 (25 bp)
TGCTCATATGGTTGCCTGGCTTGTA
LOC_Os01g60680
OsAffx.23875.1.S1_at--713--271Chr01:35417373..35417397 (25 bp)
ATATGGTTGCCTGGCTTGTAGTTCC
LOC_Os01g60680
OsAffx.23875.1.S1_at--221--6691Chr01:35417368..35417392 (25 bp)
GTTGCCTGGCTTGTAGTTCCTGCAT
LOC_Os01g60680
OsAffx.23875.1.S1_at--564--4271Chr01:35417364..35417388 (25 bp)
CCTGGCTTGTAGTTCCTGCATTGGC
LOC_Os01g60680
OsAffx.23875.1.S1_at--830--7231Chr01:35415935..35415959 (25 bp)
GTCGCTGTGTCTGGGATCCACGGCA
LOC_Os01g60680
OsAffx.23875.1.S1_at--894--7431Chr01:35415929..35415953 (25 bp)
GTGTCTGGGATCCACGGCAGTAAAA
LOC_Os01g60680
OsAffx.23875.1.S1_at--415--7811Chr01:35415922..35415946 (25 bp)
GGATCCACGGCAGTAAAATAACATT
LOC_Os01g60680
Target Sequence 
GTGAGTTGTACGGTTATCAATGCTCTACATGCTCATATGGTTGCCTGGCTTGTAGTTCCTGCATTGGCCTGCTTGGTGTT
GATTCACGACAGCGAAAAATACTCCCTAGTCCCTACATTAGTTCTTCACAGTGTGACTTGGAAAGGACAAGTACGAGACC
TCTTGGCAGAGGCTTGGTTAAAATTCTTGCTTTGCTGAAGGAAGAAGATGCCAATGGTCCAACCTGTGACTGTCACGATG
ACAAAACGCATTGCCAGCGCAGCACCCTCGTCGCTGTGTCTGGGATCCACGGCAGTAAAATAACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis