Browse Element(s) Details


OsAffx.23875.2.S1_at

Description tigr:9629.m05965
TID=OsAffx.23875.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6068010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23875.2.S1_at--1056--10571Chr01:35416847..35416871 (25 bp)
TTCTACTTTTGTGTGTCATGTGGAG
LOC_Os01g60680
OsAffx.23875.2.S1_at--955--2651Chr01:35416503..35416527 (25 bp)
AAGCGCAACCTTTTCAGAGCTTTGC
LOC_Os01g60680
OsAffx.23875.2.S1_at--101--4891Chr01:35416485..35416509 (25 bp)
GCTTTGCATAGCTGTGGTTGAATTC
LOC_Os01g60680
OsAffx.23875.2.S1_at--299--6291Chr01:35416440..35416464 (25 bp)
GATGATAACTGTTCCCTTTAGAAAC
LOC_Os01g60680
OsAffx.23875.2.S1_at--284--8811Chr01:35416398..35416422 (25 bp)
TGTTGACTGGGTCTACCACATTCGA
LOC_Os01g60680
OsAffx.23875.2.S1_at--718--5931Chr01:35416375..35416399 (25 bp)
GAGCAGACGCTATCAGTTCAATCAA
LOC_Os01g60680
OsAffx.23875.2.S1_at--1157--231Chr01:35416316..35416340 (25 bp)
ATATCCTCACAGAAAGCAGCTACAG
LOC_Os01g60680
OsAffx.23875.2.S1_at--483--8071Chr01:35416182..35416206 (25 bp)
GGAGCAAAGCTACAGGCATCTGCAT
LOC_Os01g60680
OsAffx.23875.2.S1_at--703--3551Chr01:35416166..35416190 (25 bp)
CATCTGCATGTGGACGTGGATCTCA
LOC_Os01g60680
OsAffx.23875.2.S1_at--726--7511NONE
GTGGATCTCAGAAGTGTCATTGGCT
NONE
OsAffx.23875.2.S1_at--860--7132Chr05:16605047..16605182 (25 bp)
GTCATTGGCTTAAGCAACACTGCAT
NONE
Target Sequence 
TTCTACTTTTGTGTGTCATGTGGAGGAACTTTGGGGCAGCAAAGCGCAACCTTTTCAGAGCTTTGCATAGCTGTGGTTGA
ATTCTTTGTGAAAAGAAAGCAAAAGATGATAACTGTTCCCTTTAGAAACACATTTCCTGAAACATTTGTTGACTGGGTCT
ACCACATTCGAGCAGACGCTATCAGTTCAATCAACAAACTGCCCAAACATATTTGTATACAACATCTCATATCCTCACAG
AAAGCAGCTACAGGTGCAGATTATACTAATGCAAAATATGATTGTTTGGAGCAAAGCTACAGGCATCTGCATGTGGACGT
GGATCTCAGAAGTGTCATTGGCTTAAGCAACACTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23875.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis