Browse Element(s) Details


OsAffx.23902.2.S1_at

Description tigr:9629.m06436
TID=OsAffx.23902.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6494911/11hypothetical protein
LOC_Os01g6338911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23902.2.S1_at--286--5872Chr01:38023215..38023239 (25 bp)
GAGCGAGGTCAATGCTTACCACGCC
LOC_Os01g64949
OsAffx.23902.2.S1_at--634--6152Chr01:38023211..38023235 (25 bp)
GAGGTCAATGCTTACCACGCCATTG
LOC_Os01g64949
OsAffx.23902.2.S1_at--836--9732Chr01:38023207..38023231 (25 bp)
TCAATGCTTACCACGCCATTGCCAG
LOC_Os01g64949
OsAffx.23902.2.S1_at--1007--9012Chr01:38023166..38023190 (25 bp)
TGCACACCTGCCGTTGGCTGGGAAG
LOC_Os01g64949
OsAffx.23902.2.S1_at--1129--10832Chr01:38023153..38023177 (25 bp)
TTGGCTGGGAAGTGGTGCTCACCAT
LOC_Os01g64949
OsAffx.23902.2.S1_at--991--8432Chr01:38023127..38023151 (25 bp)
GGCCATCGAAGAGGACGACGGTCTC
LOC_Os01g64949
OsAffx.23902.2.S1_at--894--952Chr01:38023116..38023140 (25 bp)
AGGACGACGGTCTCGAGGCAGGCCG
LOC_Os01g64949
OsAffx.23902.2.S1_at--655--7692Chr01:38023066..38023090 (25 bp)
GGGTGCCACTACAGGCTTGCGCACT
LOC_Os01g64949
OsAffx.23902.2.S1_at--641--4652Chr01:38023032..38023056 (25 bp)
GCGTCCTGAGGAGGTCGCATCGCTC
LOC_Os01g64949
OsAffx.23902.2.S1_at--492--7232Chr01:38023019..38023043 (25 bp)
GTCGCATCGCTCACCGTGGGAGAGT
LOC_Os01g64949
OsAffx.23902.2.S1_at--583--7492Chr01:38022977..38023001 (25 bp)
GTGGTCGCCATGGAGACTTAGAGCA
LOC_Os01g64949
Target Sequence 
GAGCGAGGTCAATGCTTACCACGCCATTGCCAGCTGCTGCAAATGTGCCTGCACACCTGCCGTTGGCTGGGAAGTGGTGC
TCACCATGGGCCATCGAAGAGGACGACGGTCTCGAGGCAGGCCGCCGGGGTGGGGCGGCGGTGCTTGCCGGGTGCCACTA
CAGGCTTGCGCACTTGCCGTGGGGCGTCCTGAGGAGGTCGCATCGCTCACCGTGGGAGAGTGGCCGGCGGAAGGAGCCGT
GGTCGCCATGGAGACTTAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23902.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis