Browse Element(s) Details


OsAffx.23988.1.S1_at

Description tigr:9629.m06954
TID=OsAffx.23988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aminotransferase, classes I and II, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7037011/11Serine palmitoyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein
LOC_Os01g70350OsAffx.21841.1.S1_at9/111+41082603..41083734hypothetical protein
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23988.1.S1_at--852--2311Chr01:41094305..41094327 (23 bp)
AAAGGTTGCCATTGTTACTGTTTCA
LOC_Os01g70370
OsAffx.23988.1.S1_at--467--7911Chr01:41094302..41094326 (25 bp)
GGTTGCCATTGTTACTGTTTCATTT
LOC_Os01g70370
OsAffx.23988.1.S1_at--23--4451Chr01:41094298..41094322 (25 bp)
GCCATTGTTACTGTTTCATTTCCGG
LOC_Os01g70370
OsAffx.23988.1.S1_at--804--3591Chr01:41094296..41094320 (25 bp)
CATTGTTACTGTTTCATTTCCGGCA
LOC_Os01g70370
OsAffx.23988.1.S1_at--439--8771Chr01:41094293..41094317 (25 bp)
TGTTACTGTTTCATTTCCGGCAACG
LOC_Os01g70370
OsAffx.23988.1.S1_at--1148--9911Chr01:41094290..41094314 (25 bp)
TACTGTTTCATTTCCGGCAACGCCA
LOC_Os01g70370
OsAffx.23988.1.S1_at--620--10531Chr01:41094284..41094308 (25 bp)
TTCATTTCCGGCAACGCCACTGCTA
LOC_Os01g70370
OsAffx.23988.1.S1_at--64--4411Chr01:41094269..41094293 (25 bp)
GCCACTGCTACTTGCCAGAGCTAGG
LOC_Os01g70370
OsAffx.23988.1.S1_at--1132--251Chr01:41094244..41094268 (25 bp)
ATATGCATATCAGCTTCCCACTCTA
LOC_Os01g70370
OsAffx.23988.1.S1_at--908--4951Chr01:41094240..41094264 (25 bp)
GCATATCAGCTTCCCACTCTAGGGA
LOC_Os01g70370
OsAffx.23988.1.S1_at--1049--5231Chr01:41094062..41094086 (25 bp)
GAATCAAATATTTACCAGTGGAGCA
LOC_Os01g70370
Target Sequence 
AAAGGTTGCCATTGTTACTGTTTCATTTCCGGCAACGCCACTGCTACTTGCCAGAGCTAGGATATGCATATCAGCTTCCC
ACTCTAGGGAAGATCTTATTAAAGGATTGGAGGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATATTTACCAGTG
GAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis