Browse Element(s) Details


OsAffx.24014.1.S1_at

Description tigr:9629.m07166
TID=OsAffx.24014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7244011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72420Os.5540.2.S1_at11/111+42326677..42329626C2 domain containing protein, expressed
LOC_Os01g72430Os.26479.1.A1_a_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.2.S1_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_x_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_at10/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72440OsAffx.24014.1.S1_at11/111+42338035..42338356hypothetical protein
LOC_Os01g72450Os.42819.1.S1_x_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72450Os.42819.1.S1_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72460Os.24906.1.S1_at10/111+42344922..42346355NADPH:quinone oxidoreductase, putative, expressed
LOC_Os01g72470Os.51382.1.S1_at11/111+42347709..42348313expressed protein
LOC_Os01g72480Os.10877.1.S1_at11/111+42352542..42354833Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24014.1.S1_at--793--3391Chr01:42338300..42338324 (25 bp)
CAGCTTCCACGCGTGGTCGCAGATA
LOC_Os01g72440
OsAffx.24014.1.S1_at--351--4671Chr01:42338226..42338314 (25 bp)
GCGTGGTCGCAGATACAGCGAAACT
LOC_Os01g72440
OsAffx.24014.1.S1_at--1127--3371Chr01:42338211..42338235 (25 bp)
CAGCGAAACTCGATCAATGGTCAAA
LOC_Os01g72440
OsAffx.24014.1.S1_at--320--3791Chr01:42338203..42338227 (25 bp)
CTCGATCAATGGTCAAAAGGCAGTG
LOC_Os01g72440
OsAffx.24014.1.S1_at--359--911Chr01:42338186..42338210 (25 bp)
AGGCAGTGAAATGGCTTGAAAGAGA
LOC_Os01g72440
OsAffx.24014.1.S1_at--22--2791Chr01:42338167..42338191 (25 bp)
AAGAGAGAGTAGTGCTCCGCATAGC
LOC_Os01g72440
OsAffx.24014.1.S1_at--616--10071Chr01:42338158..42338182 (25 bp)
TAGTGCTCCGCATAGCAAGAGCCAA
LOC_Os01g72440
OsAffx.24014.1.S1_at--974--10011Chr01:42338146..42338170 (25 bp)
TAGCAAGAGCCAAGATGGTGTGCAG
LOC_Os01g72440
OsAffx.24014.1.S1_at--1007--5031Chr01:42338089..42338113 (25 bp)
GCAGATGAGCAGGACTGAAAAAGCT
LOC_Os01g72440
OsAffx.24014.1.S1_at--72--2691Chr01:42338069..42338093 (25 bp)
AAGCTGAGGAGCTAGCCTTCCTCGT
LOC_Os01g72440
OsAffx.24014.1.S1_at--702--8871Chr01:42338065..42338089 (25 bp)
TGAGGAGCTAGCCTTCCTCGTGGCC
LOC_Os01g72440
Target Sequence 
CAGCTTCCACGCGTGGTCGCAGATACAGCGAAACTCGATCAATGGTCAAAAGGCAGTGAAATGGCTTGAAAGAGAGAGTA
GTGCTCCGCATAGCAAGAGCCAAGATGGTGTGCAGTGTGCAGATGGGGAGGAGTGGAGAAGATCAGAGCAGATGAGCAGG
ACTGAAAAAGCTGAGGAGCTAGCCTTCCTCGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis