Browse Element(s) Details


OsAffx.24018.1.S1_at

Description tigr:9629.m07211
TID=OsAffx.24018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 82739-81282
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7285011/11GDSL-motif lipase/hydrolase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24018.1.S1_at--864--9851Chr01:42583381..42583405 (25 bp)
TACAACTATACAGCGCGGAGGACTA
LOC_Os01g72850
OsAffx.24018.1.S1_at--831--951Chr01:42583363..42583387 (25 bp)
AGGACTACTCCGATCTGCTCATCAA
LOC_Os01g72850
OsAffx.24018.1.S1_at--197--3491Chr01:42583008..42583353 (25 bp)
CAGGCAGACACTGGCTCTGTACAGT
LOC_Os01g72850
OsAffx.24018.1.S1_at--825--7111Chr01:42582898..42582922 (25 bp)
GTCAGTGCGTCGATCAGGTGAACCA
LOC_Os01g72850
OsAffx.24018.1.S1_at--462--4351Chr01:42582876..42582900 (25 bp)
CCAGATGGTGGGTTTCTTCAACCAA
LOC_Os01g72850
OsAffx.24018.1.S1_at--153--9711Chr01:42582859..42582883 (25 bp)
TCAACCAAGGGCTGAGATCTCTCGT
LOC_Os01g72850
OsAffx.24018.1.S1_at--17--6051Chr01:42582846..42582870 (25 bp)
GAGATCTCTCGTTGATAAGCTGAAC
LOC_Os01g72850
OsAffx.24018.1.S1_at--509--2691Chr01:42582830..42582854 (25 bp)
AAGCTGAACGCTGACCATCCTGATG
LOC_Os01g72850
OsAffx.24018.1.S1_at--962--6351Chr01:42582809..42582833 (25 bp)
GATGCCATGTTCATCTACGGCAACA
LOC_Os01g72850
OsAffx.24018.1.S1_at--245--2171Chr01:42582787..42582811 (25 bp)
ACACCTACGATGCTGTCTACAACAT
LOC_Os01g72850
OsAffx.24018.1.S1_at--75--371Chr01:42582588..42582781 (25 bp)
ATAATCCTCACAAATACGGGTTCAG
LOC_Os01g72850
Target Sequence 
TACAACTATACAGCGCGGAGGACTACTCCGATCTGCTCATCAACCACTACTCCAGGCAGACACTGGCTCTGTACAGTGTT
GGGCTGAGGAAGTTTCTCCTGGATGGGGTGGGCCCACTGGGCTGCCTCCCCAGCCTGAGGGCCTCCGGATTGGGCCCACA
AGGTCAGTGCGTCGATCAGGTGAACCAGATGGTGGGTTTCTTCAACCAAGGGCTGAGATCTCTCGTTGATAAGCTGAACG
CTGACCATCCTGATGCCATGTTCATCTACGGCAACACCTACGATGCTGTCTACAACATGATCAATAATCCTCACAAATAC
GGGTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis