Browse Element(s) Details


OsAffx.24019.1.S1_x_at

Description tigr:9629.m07214
TID=OsAffx.24019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA mismatch repair protein MutL, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g728907/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g376001/11Acyltransferase family protein
LOC_Os12g222841/11ABC-2 type transporter family protein, expressed
LOC_Os07g154901/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0010025biological_processwax biosynthesis
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005515molecular_functionprotein binding
GO:0008415molecular_functionacyltransferase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24019.1.S1_x_at--909--5951Chr01:42605120..42605144 (25 bp)
GAGAAAGCTCTTCTTTACATGGACG
LOC_Os01g72890
OsAffx.24019.1.S1_x_at--185--1251Chr01:42605252..42605276 (25 bp)
AGTTGAGATTCACACTTGCACCACG
LOC_Os01g72890
OsAffx.24019.1.S1_x_at--274--8231Chr01:42605276..42605300 (25 bp)
GGCAAAGGGCTTCTTCACCAATGAA
LOC_Os01g72890
OsAffx.24019.1.S1_x_at--1006--5971Chr01:42605341..42605365 (25 bp)
GAGAAAGGCGCTCCTAGTGCTGAAA
LOC_Os01g72890
OsAffx.24019.1.S1_x_at--377--1611NONE
AGCGCAGGGAACTCCTTCACCTAGG
NONE
OsAffx.24019.1.S1_x_at--22--3751Chr01:42606279..42606303 (25 bp)
CTCATTCACGTTCCAGATCAATTTC
LOC_Os01g72890
OsAffx.24019.1.S1_x_at--1147--3111NONE
AATTTCTCCTCGAACGCATCGTAGA
NONE
OsAffx.24019.1.S1_x_at--588--1451Chr01:42607023..42607047 (25 bp)
AGAAGCATCTCTAGCGACAGCCGGA
LOC_Os01g72890
OsAffx.24019.1.S1_x_at--749--6951Chr01:42607076..42607100 (25 bp)
GTAGAACTCCTGACATTGCGTTCCT
LOC_Os01g72890
OsAffx.24019.1.S1_x_at--1128--10591Chr01:42607091..42607520 (25 bp)
TTGCGTTCCTGGCAGAAGACTACCG
NONE
OsAffx.24019.1.S1_x_at--1032--73714Chr12:22683613..22683637 (25 bp)
GTGAGGTTGGGAACTCACCTCCCGC
NONE
Target Sequence 
GAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCA
AAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTG
CTGAAAAGGATGTGCAGCAGCGCAGGGAACTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCC
CTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCA
CGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACGCATCGTAG
AGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTC
CTGGCAGAAGACTACCGCACACGCAAGCGGCTGTGTTCGGAAGGTGAGGTTGGGAACTCACCTCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24019.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis