Browse Element(s) Details


OsAffx.24074.1.S1_at

Description tigr:9630.m00213
TID=OsAffx.24074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0297011/11PAP/25A associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24074.1.S1_at--738--4711Chr02:1163752..1163776 (25 bp)
GCTGGCCTTCATTGTAAAGCACTGG
LOC_Os02g02970
OsAffx.24074.1.S1_at--1137--8511Chr02:1163809..1163829 (21 bp)
TGGAACCCTTTCGAGCTATGCATAT
LOC_Os02g02970
OsAffx.24074.1.S1_at--274--6011Chr02:1163964..1163988 (25 bp)
GAGAGCCCAAGATTCTACCATGTTT
LOC_Os02g02970
OsAffx.24074.1.S1_at--523--5111Chr02:1164555..1164579 (25 bp)
GCACTGAATGTGCATACTTCGACCA
LOC_Os02g02970
OsAffx.24074.1.S1_at--29--4991Chr02:1164621..1164645 (25 bp)
GCATCGCCGAGTTACTGTGGGCATT
LOC_Os02g02970
OsAffx.24074.1.S1_at--10--2031Chr02:1164651..1164675 (25 bp)
ACTACTGGGCATTCCATCACGATTA
LOC_Os02g02970
OsAffx.24074.1.S1_at--803--5451Chr02:1164861..1164885 (25 bp)
GAACTGGACGACTCGCGTTGGAAAC
LOC_Os02g02970
OsAffx.24074.1.S1_at--398--5551Chr02:1164881..1164905 (25 bp)
GAAACGATCGCCATCTGATATGCAT
LOC_Os02g02970
OsAffx.24074.1.S1_at--486--6171Chr02:1164907..1164931 (25 bp)
GAGGATCCTTTCGAGACCAGCCATG
LOC_Os02g02970
OsAffx.24074.1.S1_at--100--991Chr02:1164977..1165001 (25 bp)
AGGAGTTTGAGCGAGCTGCCACCAT
LOC_Os02g02970
OsAffx.24074.1.S1_at--245--1171Chr02:1165007..1165031 (25 bp)
AGTACGACGATGACCCTTGTGTGGC
LOC_Os02g02970
Target Sequence 
GCTGGCCTTCATTGTAAAGCACTGGGCCAAACTAAGGGGCGTTAATGAAACATATCGTGGAACCCTTTCGAGCTATGCAT
ATGTGCTTATGTGCATTAGCTTCTTGCAGCAAAGAGAGCCCAAGATTCTACCATGTTTGCAGGCGATGGAGCCAACATAT
ACTGTGGTTGTCGATGGCACTGAATGTGCATACTTCGACCAAGTTGACCAGCTTAAAGATTTTGGTGCTGAAAACAAGGA
GAGCATCGCCGAGTTACTGTGGGCATTCTTCCACTACTGGGCATTCCATCACGATTACAGGAACGATGTCATCTCCGTCC
GCATGGGGAACACAATCAGCAAGCAGGAGAAGAACTGGACGACTCGCGTTGGAAACGATCGCCATCTGATATGCATCGAG
GATCCTTTCGAGACCAGCCATGACCTCGGTCGTGTTGTCGACAGGCAGACAATCAGGGTTCTCAGGGAGGAGTTTGAGCG
AGCTGCCACCATTCTGCAGTACGACGATGACCCTTGTGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis