Browse Element(s) Details


OsAffx.24080.1.S1_at

Description tigr:9630.m00233
TID=OsAffx.24080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable neutral invertase F28P5.11 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0332011/11beta-fructofuranosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03270Os.5123.1.S1_at11/112+1313981..1318881AT hook motif family protein, expressed
LOC_Os02g03280Os.6263.1.S1_at11/112+1326922..1330305Bax inhibitor-1, putative, expressed
LOC_Os02g03294NANA2+1331397..1333193cyclin family protein, putative, expressed
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24080.1.S1_at--975--8931Chr02:1343283..1343307 (25 bp)
TGACTGGATATTCGACTTCATGCCC
LOC_Os02g03320
OsAffx.24080.1.S1_at--282--2591Chr02:1343332..1343356 (25 bp)
AACGTCAGCCCTGCGAGGATGGACT
LOC_Os02g03320
OsAffx.24080.1.S1_at--292--6231Chr02:1343349..1343373 (25 bp)
GATGGACTTCCGCTGGTTCTGCCTG
LOC_Os02g03320
OsAffx.24080.1.S1_at--315--9491Chr02:1343366..1343390 (25 bp)
TCTGCCTGGGCAACTTCATCGCGAT
LOC_Os02g03320
OsAffx.24080.1.S1_at--526--911Chr02:1343417..1343441 (25 bp)
AGGCTGAAGCAATCCTGGACCTTGT
LOC_Os02g03320
OsAffx.24080.1.S1_at--603--5911Chr02:1343458..1343482 (25 bp)
GAGCTCATCGGAGAGATGCCCATGA
LOC_Os02g03320
OsAffx.24080.1.S1_at--593--591Chr02:1343473..1343497 (25 bp)
ATGCCCATGAAGGTGTGTTACCCCG
LOC_Os02g03320
OsAffx.24080.1.S1_at--184--7431Chr02:1343487..1343511 (25 bp)
GTGTTACCCCGCGATGGAGAACCAG
LOC_Os02g03320
OsAffx.24080.1.S1_at--122--2651Chr02:1343506..1343530 (25 bp)
AACCAGGAGTGGCAGATCGTCACCG
LOC_Os02g03320
OsAffx.24080.1.S1_at--573--2731Chr02:1343834..1343858 (25 bp)
AAGCAAGCGCGCAAGTTCCAGACGT
LOC_Os02g03320
OsAffx.24080.1.S1_at--15--2771Chr02:1343846..1343870 (25 bp)
AAGTTCCAGACGTGGTCCGTGGCCG
LOC_Os02g03320
Target Sequence 
TGACTGGATATTCGACTTCATGCCCAGCCGCGGCGGGTACTTCATCGGCAACGTCAGCCCTGCGAGGATGGACTTCCGCT
GGTTCTGCCTGGGCAACTTCATCGCGATCCTCTCCTCGCTGACAACCGGAGAACAGGCTGAAGCAATCCTGGACCTTGTG
GAGGAGCGCTGGGAGGAGCTCATCGGAGAGATGCCCATGAAGGTGTGTTACCCCGCGATGGAGAACCAGGAGTGGCAGAT
CGTCACCGGGTGCGACCCCAAGAACACCAGATGGAGCTACCACAATGGAGGATCATGGCCAGTGTTGCTGTGGCTGCTGG
TGGCGGTGAGCGTGAAGCTGGGGCGGCCACACATCGCGAGGCGGGCGGTGGAGGTGATGGAGAAGCGGCTGGTGAAGGAC
GAGTTCCCGGAGTACTACGACGGGAAGGCCGGGAGGTACGTGGGGAAGCAAGCGCGCAAGTTCCAGACGTGGTCCGTGGC
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis