Browse Element(s) Details


OsAffx.24087.1.S1_at

Description tigr:9630.m00272
TID=OsAffx.24087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0368011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03650OsAffx.24085.1.S1_at10/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.31040.1.S1_at5/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.26303.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.4302.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24087.1.S1_at--788--3611Chr02:1538119..1538143 (25 bp)
CTTGGGCATGAGAGATCCGAGCGAT
LOC_Os02g03680
OsAffx.24087.1.S1_at--836--6031Chr02:1538108..1538132 (25 bp)
GAGATCCGAGCGATACTTTAGATAC
LOC_Os02g03680
OsAffx.24087.1.S1_at--493--4211Chr02:1538103..1538127 (25 bp)
CCGAGCGATACTTTAGATACTTGAA
LOC_Os02g03680
OsAffx.24087.1.S1_at--194--3671Chr02:1538093..1538117 (25 bp)
CTTTAGATACTTGAAGATGTTCTTG
LOC_Os02g03680
OsAffx.24087.1.S1_at--980--9571Chr02:1538073..1538097 (25 bp)
TCTTGGGTTCAAGGATGGAGAAGTC
LOC_Os02g03680
OsAffx.24087.1.S1_at--336--2911Chr02:1538063..1538087 (25 bp)
AAGGATGGAGAAGTCGATGTTCGAT
LOC_Os02g03680
OsAffx.24087.1.S1_at--570--4051Chr02:1538049..1538073 (25 bp)
CGATGTTCGATAGGGTGGTTATTCA
LOC_Os02g03680
OsAffx.24087.1.S1_at--118--8271Chr02:1538017..1538041 (25 bp)
GGCAGAGAGAACATCCGGTTGCACA
LOC_Os02g03680
OsAffx.24087.1.S1_at--559--1351Chr02:1538012..1538036 (25 bp)
AGAGAACATCCGGTTGCACAACCAC
LOC_Os02g03680
OsAffx.24087.1.S1_at--991--9011Chr02:1537998..1538022 (25 bp)
TGCACAACCACCTGCTCATGTCGGT
LOC_Os02g03680
OsAffx.24087.1.S1_at--256--9631Chr02:1537983..1538007 (25 bp)
TCATGTCGGTCCTCCGCAATGCATC
LOC_Os02g03680
Target Sequence 
CTTGGGCATGAGAGATCCGAGCGATACTTTAGATACTTGAAGATGTTCTTGGGTTCAAGGATGGAGAAGTCGATGTTCGA
TAGGGTGGTTATTCAGACAATCGGCAGAGAGAACATCCGGTTGCACAACCACCTGCTCATGTCGGTCCTCCGCAATGCAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis