Browse Element(s) Details


OsAffx.2418.1.S1_at

Description tigr:9629.m06532
TID=OsAffx.2418.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g658709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein
LOC_Os01g65880Os.4655.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65880Os.51530.1.S1_at11/111+38580899..38584499MtN3/saliva family protein, expressed
LOC_Os01g65890Os.25060.1.S1_at11/111+38584858..38588284DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g65900Os.9902.1.S1_at10/111+38588715..38592358GRAS family transcription factor containing protein, expressed
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2418.1.S1_at--991--131Chr01:38572735..38572759 (25 bp)
ATTACACGCATCGTCCATGACTAAT
LOC_Os01g65870
OsAffx.2418.1.S1_at--418--551Chr01:38573167..38573191 (25 bp)
ATCCGCCTGGGATAATACTGCTGCC
LOC_Os01g65870
OsAffx.2418.1.S1_at--343--9111Chr01:38573185..38573209 (25 bp)
TGCTGCCCTCACATATAGGACGCAA
LOC_Os01g65870
OsAffx.2418.1.S1_at--520--3091Chr01:38573210..38573234 (25 bp)
AATACGAACGCATTTACACCCATAA
LOC_Os01g65870
OsAffx.2418.1.S1_at--1134--9891Chr01:38573260..38573284 (25 bp)
TACTACTACTTCTCTGTTGCGTGGC
LOC_Os01g65870
OsAffx.2418.1.S1_at--379--7551Chr01:38573280..38573304 (25 bp)
GTGGCGACACTGTCCGTGACCGGAT
LOC_Os01g65870
OsAffx.2418.1.S1_at--1102--7951Chr01:38573301..38573325 (25 bp)
GGATCAGCCACGCTTCTAGTTCTAC
LOC_Os01g65870
OsAffx.2418.1.S1_at--318--3711Chr01:38573316..38573340 (25 bp)
CTAGTTCTACTACTGGTGGGCAACA
LOC_Os01g65870
OsAffx.2418.1.S1_at--45--7491Chr01:38573331..38573355 (25 bp)
GTGGGCAACAGCGTCGTTCACAGTT
LOC_Os01g65870
OsAffx.2418.1.S1_at--1066--10491NONE
TTCACAGTTCGACCCGTATGGAGTT
NONE
OsAffx.2418.1.S1_at--491--1791NONE
ACCCGTATGGAGTTGATGCCGACTT
NONE
Target Sequence 
ATTACACGCATCGTCCATGACTAATCAGATCATGAGAAGCTCTGGTATATCGATTATGGAGTATATCAGTATACGGAGTA
CAGGATCCGCCTGGGATAATACTGCTGCCCTCACATATAGGACGCAAAATACGAACGCATTTACACCCATAAACAGAGAG
TCTACGAATAGTACGGCTACTACTACTTCTCTGTTGCGTGGCGACACTGTCCGTGACCGGATCAGCCACGCTTCTAGTTC
TACTACTGGTGGGCAACAGCGTCGTTCACAGTTCGACCCGTATGGAGTTGATGCCGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis