Browse Element(s) Details


OsAffx.24296.1.S1_at

Description tigr:9630.m01655
TID=OsAffx.24296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1766011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17620OsAffx.12089.1.S1_at11/112+10139209..10143835isochorismatase family protein, expressed
LOC_Os02g17630OsAffx.12090.1.S1_at11/112+10147149..10147622hypothetical protein
LOC_Os02g17640OsAffx.12091.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17640Os.11158.1.S1_at10/112+10152181..10155561isochorismatase family protein, expressed
LOC_Os02g17650Os.18701.1.S1_at11/112+10155841..10164745tocopherol cyclase, chloroplast precursor, putative, expressed
LOC_Os02g17660OsAffx.24296.1.S1_at11/112+10165998..10166522hypothetical protein
LOC_Os02g17670OsAffx.17842.1.S1_at3/112+10173442..10174404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24296.1.S1_at--258--10151Chr02:10166452..10166476 (25 bp)
TATGCCAGCCTGGTGTTGGATGCAC
LOC_Os02g17660
OsAffx.24296.1.S1_at--249--1871Chr02:10166429..10166453 (25 bp)
ACGACCATAGGCGTGGGTTGCTCGA
LOC_Os02g17660
OsAffx.24296.1.S1_at--908--2571Chr02:10166388..10166412 (25 bp)
AACGGGCTTGGCTGGCCTGGCATTC
LOC_Os02g17660
OsAffx.24296.1.S1_at--1059--8411Chr02:10166375..10166399 (25 bp)
GGCCTGGCATTCGATGACGCTGGTA
LOC_Os02g17660
OsAffx.24296.1.S1_at--1003--8931Chr02:10166361..10166385 (25 bp)
TGACGCTGGTAGGTGTGATCGCAAC
LOC_Os02g17660
OsAffx.24296.1.S1_at--755--8831Chr02:10166346..10166370 (25 bp)
TGATCGCAACAGCTTGGGTCGTAGT
LOC_Os02g17660
OsAffx.24296.1.S1_at--255--7731Chr02:10166174..10166198 (25 bp)
GGTGGCATGAAGCAAACTCTTCTCC
LOC_Os02g17660
OsAffx.24296.1.S1_at--815--1411Chr02:10166149..10166173 (25 bp)
AGACACATGCCCTCTTGAGGCAGCG
LOC_Os02g17660
OsAffx.24296.1.S1_at--500--10771Chr02:10166135..10166159 (25 bp)
TTGAGGCAGCGGCTAGCCACTACAA
LOC_Os02g17660
OsAffx.24296.1.S1_at--484--1313Chr07:11236951..11236971 (21 bp)
AGATGGCCACGTTGGCAGGCTTATA
NONE
OsAffx.24296.1.S1_at--1023--10171Chr02:10166090..10166114 (25 bp)
TATACTGGGAAGAGCGGATCCACTC
LOC_Os02g17660
Target Sequence 
TATGCCAGCCTGGTGTTGGATGCACGACCATAGGCGTGGGTTGCTCGATGGCAAGCGGGTCGACAACGGGCTTGGCTGGC
CTGGCATTCGATGACGCTGGTAGGTGTGATCGCAACAGCTTGGGTCGTAGTGGAGGACACACAATGAGGTGGGCGTTAGG
TGGCATGAAGCAAACTCTTCTCCAGACACATGCCCTCTTGAGGCAGCGGCTAGCCACTACAAGATGGCCACGTTGGCAGG
CTTATACTGGGAAGAGCGGATCCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis