Browse Element(s) Details


OsAffx.24436.3.S1_at

Description tigr:9639.m00289
TID=OsAffx.24436.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g038109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein
LOC_Os11g03810OsAffx.24436.3.S1_at9/1111+1500738..1504746hypothetical protein
LOC_Os11g03810OsAffx.7475.1.S1_at3/1111+1500738..1504746hypothetical protein
LOC_Os11g03820Os.17338.1.S1_at11/1111+1505830..1511513D-mannose binding lectin family protein, expressed
LOC_Os11g03830Os.46785.2.S1_x_at5/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.30226.2.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.442.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830Os.13704.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.21756.3.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03840Os.50555.1.S1_at1/1111+1521292..1523817D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24436.3.S1_at--154--4971NONE
GCATCGAAGCGAAGTTTACCCTCAA
NONE
OsAffx.24436.3.S1_at--11--10191NONE
TATACTCCACTAACGATGGTGGCGT
NONE
OsAffx.24436.3.S1_at--861--4893Chr12:1450000..1450024 (25 bp)
GCTTCAACCTTGAGTGTTCTTTCGT
NONE
OsAffx.24436.3.S1_at--619--8792Chr12:1450014..1450038 (25 bp)
TGTTCTTTCGTCCAGACCAGCAAAA
NONE
OsAffx.24436.3.S1_at--562--3352Chr12:1450041..1450065 (25 bp)
CACGCCATTGGTGCTAAATACGACA
NONE
OsAffx.24436.3.S1_at--175--9912Chr12:1450059..1450083 (25 bp)
TACGACAAGTTTTCCACGGTTGGTG
NONE
OsAffx.24436.3.S1_at--254--10832Chr12:1450078..1450102 (25 bp)
TTGGTGGAACCACCTACTTCACCCA
NONE
OsAffx.24436.3.S1_at--547--2051Chr11:1503370..1503394 (25 bp)
ACTTCACCCACGTCGTAATATACAG
LOC_Os11g03810
OsAffx.24436.3.S1_at--113--9352Chr12:1451088..1451112 (25 bp)
TCGCTGATGGATGAGCCGATCGGCT
NONE
OsAffx.24436.3.S1_at--806--492Chr12:1451106..1451130 (25 bp)
ATCGGCTACTTCCACGAGAGCGCGT
NONE
OsAffx.24436.3.S1_at--82--512Chr12:1451146..1451170 (25 bp)
ATCGAGAGCTTCCACAACGAGATGG
NONE
Target Sequence 
GCATCGAAGCGAAGTTTACCCTCAATTTTTTGGTGACGATCTTCCTCGGCTCTACATATACTCCACTAACGATGGTGGCG
TGAAATTAAAGTGCTTCAACCTTGAGTGTTCTTTCGTCCAGACCAGCAAAAAGCACGCCATTGGTGCTAAATACGACAAG
TTTTCCACGGTTGGTGGAACCACCTACTTCACCCACGTCGTAATATACAGGGATGATGGGCCGGCGGTGTGGTGGGTGTC
GCTGATGGATGAGCCGATCGGCTACTTCCACGAGAGCGCGTTCGCGGCGCCCTTCATCGAGAGCTTCCACAACGAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24436.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis