Browse Element(s) Details


OsAffx.24562.1.S1_at

Description tigr:9630.m03212
TID=OsAffx.24562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3380011/11hypothetical protein
LOC_Os11g451005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein
LOC_Os02g33790OsAffx.24561.1.S1_at11/112+20151874..20152900hypothetical protein
LOC_Os02g33800OsAffx.24562.1.S1_at11/112+20155442..20155786hypothetical protein
LOC_Os02g33810OsAffx.2849.1.S1_at11/112+20158053..20158741hypothetical protein
LOC_Os02g33820Os.12094.1.S1_a_at11/112+20159778..20160781ABA/WDS induced protein, expressed
LOC_Os02g33830OsAffx.24563.1.S1_at11/112+20163722..20166287expressed protein
LOC_Os02g33840Os.53945.1.S1_at11/112+20168947..20170732F-box domain containing protein, expressed
LOC_Os02g33850OsAffx.2850.1.S1_at11/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33850OsAffx.26611.1.S1_x_at1/112+20173145..20176162Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os02g33860Os.8210.1.S1_at11/112+20176345..20180268Will die slowly protein, putative, expressed
LOC_Os02g33870Os.53142.1.S1_at3/112+20180414..20183719retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24562.1.S1_at--436--6232Chr04:6565910..6566107 (25 bp)
GATGGCTGTCGATGCCTTGGCTGCC
NONE
OsAffx.24562.1.S1_at--882--7111Chr02:20155669..20155693 (25 bp)
GTCTTGTCCGCGGATGAGGTAAACG
LOC_Os02g33800
OsAffx.24562.1.S1_at--604--2931Chr02:20155636..20155660 (25 bp)
AAGGAAGGTCTCATCAATGCCCTCA
LOC_Os02g33800
OsAffx.24562.1.S1_at--964--3012Chr11:26783069..26783092 (24 bp)
AATGCCCTCATAGCCGGCGATCTGG
LOC_Os11g45100
OsAffx.24562.1.S1_at--521--3392Chr11:26783117..26783141 (25 bp)
CAGCTGTTCCCAGATCTGGTATGGG
LOC_Os11g45100
OsAffx.24562.1.S1_at--733--3432Chr11:26783127..26783151 (25 bp)
CAGATCTGGTATGGGTCCTCAAGGA
LOC_Os11g45100
OsAffx.24562.1.S1_at--941--7791Chr02:20155549..20155573 (25 bp)
GGTCCTCAAGGACGCCAGCAATCTG
LOC_Os02g33800
OsAffx.24562.1.S1_at--802--3411Chr02:20155534..20155558 (25 bp)
CAGCAATCTGCTGCATGGCGGCAAT
LOC_Os02g33800
OsAffx.24562.1.S1_at--1097--3052Chr11:26783159..26783325 (25 bp)
AATCTGCTGCATGGCGGCAATCGTG
NONE
OsAffx.24562.1.S1_at--647--6212Chr11:26783191..26783215 (25 bp)
GAGGCTGCCCAGCTCGCTCGTAGAT
LOC_Os11g45100
OsAffx.24562.1.S1_at--310--1592Chr11:26783201..26783225 (25 bp)
AGCTCGCTCGTAGATGGTCCGGCCA
LOC_Os11g45100
Target Sequence 
GATGGCTGTCGATGCCTTGGCTGCCGTCTTGTCCGCGGATGAGGTAAACGAAGATACCAAGGAAGGTCTCATCAATGCCC
TCATAGCCGGCGATCTGGGCCACATCATGAACACGCTCATCGCAGCTGTTCCCAGATCTGGTATGGGTCCTCAAGGACGC
CAGCAATCTGCTGCATGGCGGCAATCGTGCAGGTGCGAGGCTGCCCAGCTCGCTCGTAGATGGTCCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis