Browse Element(s) Details


OsAffx.24654.1.S1_at

Description tigr:9630.m03849
TID=OsAffx.24654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3994010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39910Os.27139.2.S1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910Os.27139.1.A1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910OsAffx.1564.1.A1_x_at2/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39920Os.17981.1.S1_at11/112+24133902..24140836AT hook motif family protein, expressed
LOC_Os02g39930Os.10853.1.S1_at11/112+24146244..24147204Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed
LOC_Os02g39960OsAffx.24655.1.S1_at11/112+24157684..24159784exostosin family protein, putative
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein
LOC_Os02g39990Os.55784.1.S1_at11/112+24172551..24175424meprin and TRAF homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24654.1.S1_at--660--4591Chr02:24150294..24150318 (25 bp)
GCGAACATTAATTTCCCCATGCTTT
LOC_Os02g39940
OsAffx.24654.1.S1_at--40--3131Chr02:24150285..24150309 (25 bp)
AATTTCCCCATGCTTTCGTGTGAGG
LOC_Os02g39940
OsAffx.24654.1.S1_at--984--6431Chr02:24150254..24150278 (25 bp)
GATCATGTGATCATCGGGCAGTGCA
LOC_Os02g39940
OsAffx.24654.1.S1_at--323--3491Chr02:24149974..24149998 (25 bp)
CAGGCCACTGTCCAAGATTGCGAGG
LOC_Os02g39940
OsAffx.24654.1.S1_at--949--911Chr02:24149952..24149976 (25 bp)
AGGCTCAATGTTTTGAAGGTCATCC
LOC_Os02g39940
OsAffx.24654.1.S1_at--392--8151Chr02:24149896..24149920 (25 bp)
GGAAAGAAGGCATTCACTGTTGCCC
LOC_Os02g39940
OsAffx.24654.1.S1_at--207--1971NONE
ACTGTTGCCCGAAGAAAGGTTTCAT
NONE
OsAffx.24654.1.S1_at--301--10271Chr02:24148272..24148296 (25 bp)
TTTCGTCAACAACTACCCCATGGAA
LOC_Os02g39940
OsAffx.24654.1.S1_at--1161--8151Chr02:24148251..24148275 (25 bp)
GGAAACACGTAACCAAGCCATGAAA
LOC_Os02g39940
OsAffx.24654.1.S1_at--11--2651Chr02:24148237..24148261 (25 bp)
AAGCCATGAAACCATCCAAGGATTG
LOC_Os02g39940
OsAffx.24654.1.S1_at--53--6591Chr02:24148217..24148241 (25 bp)
GATTGGAACCCCATGGAAACACGTA
LOC_Os02g39940
Target Sequence 
GCGAACATTAATTTCCCCATGCTTTCGTGTGAGGGAACGAGATCATGTGATCATCGGGCAGTGCAGGCCACTGTCCAAGA
TTGCGAGGCTCAATGTTTTGAAGGTCATCCTAAGCTCCTAGTGGGGTCAAAGAAGGGTGCAGGAAAGAAGGCATTCACTG
TTGCCCGAAGAAAGGTTTCATCGGGGTTTCAGTCGGATCAAACTGACTGGCACGCCCGCACTTCATCAAGATTTGGACCT
GCACTGGAGCTAAGCAGATCTCTCAGGCCGATGTGTTCGATTTTTTTCGTCAACAACTACCCCATGGAAACACGTAACCA
AGCCATGAAACCATCCAAGGATTGGAACCCCATGGAAACACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis