Browse Element(s) Details


OsAffx.24709.1.S1_x_at

Description tigr:9630.m04210
TID=OsAffx.24709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GTP-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4369011/11GTP-binding protein YPTM2, putative, expressed
LOC_Os01g084503/11GTP-binding protein YPTM2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43660Os.36684.1.S1_at11/112+26337715..26339599Plastocyanin-like domain containing protein, expressed
LOC_Os02g43670Os.54844.1.S1_at1/112+26342803..26347610Transferase family protein, expressed
LOC_Os02g43680OsAffx.12480.1.S1_at11/112+26358015..26358512hypothetical protein
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24709.1.S1_x_at--393--2211Chr02:26363882..26363906 (25 bp)
ACAAGCTCCTCGTTGGGAACAAGAG
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--555--1372Chr02:26363903..26363927 (25 bp)
AGAGCGACCTAACTGCCAACAAAGT
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--1098--6251Chr02:26364080..26364104 (25 bp)
GATGGGCATCCCATTCATGGAGACA
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--755--4391Chr02:26364117..26364141 (25 bp)
GCCACTAATGTGGAGCAGGCCTTTA
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--1157--831Chr02:26364141..26364165 (25 bp)
ATGGCTATGGCTGCATCCATCAAGG
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--673--2271Chr02:26364290..26364314 (25 bp)
AAATGCAAGGCCACCGACGGTGCAG
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--347--7092Chr02:26364330..26364354 (25 bp)
GTCAACCAGAAGACGTCGTGCTGCT
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--1121--9412Chr02:26364345..26364369 (25 bp)
TCGTGCTGCTCGTCCTAAAGATAAC
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--148--6471Chr02:26364364..26364388 (25 bp)
GATAACGAAGTACTTCCTTCTATGT
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--517--8811Chr02:26364518..26364542 (25 bp)
TGTTGCTCTTTGCTCACGAATCAAG
LOC_Os02g43690
OsAffx.24709.1.S1_x_at--843--10471Chr02:26364582..26364606 (25 bp)
TTACATTTTGTCCTTTCTCGCAATC
LOC_Os02g43690
Target Sequence 
ACAAGCTCCTCGTTGGGAACAAGAGCGACCTAACTGCCAACAAAGTTGTGTCATCTGAAACAGCTAAGGCGTTTGCTGAT
GAGATGGGCATCCCATTCATGGAGACAAGTGCCAAGAACGCCACTAATGTGGAGCAGGCCTTTATGGCTATGGCTGCATC
CATCAAGGACAGGATGGCGAGCCAACCGGCCGCTGCAAATGCAAGGCCACCGACGGTGCAGATCCGCGGGCAACCTGTCA
ACCAGAAGACGTCGTGCTGCTCGTCCTAAAGATAACGAAGTACTTCCTTCTATGTAAAATTCGACGTATGTTACTACTGT
TTGCTCACTACAACGTATTTGTAATATTCATTTGAACGCCCTCGATAGCATCTTTTCTTTAATCAGATGGTTAGGGAGCT
GCAAATATATATGTAACTTTGCTGTGTTGCTCTTTGCTCACGAATCAAGAGGAGCAAGCAGAACCAGTGTATTTGATTCA
TTTTACGCTTACATTTTGTCCTTTCTCGCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24709.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis