Browse Element(s) Details


OsAffx.24840.1.S1_at

Description tigr:9630.m05228
TID=OsAffx.24840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5295011/11expressed protein
LOC_Os11g450301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52920Os.26016.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.37785.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.18881.1.S1_at1/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed
LOC_Os02g52950OsAffx.24840.1.S1_at11/112+32372352..32375558expressed protein
LOC_Os02g52960OsAffx.3051.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S2_at10/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52970OsAffx.22699.1.S1_x_at2/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52970OsAffx.8279.1.S1_at1/112+32399665..32404759retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24840.1.S1_at--924--2112Chr11:26747004..26747028 (25 bp)
ACATGGGCGCGCTCTTCGACTCCAT
NONE
OsAffx.24840.1.S1_at--816--8312Chr11:26747085..26747109 (25 bp)
GGCTCAAGGGCAAGTACCTGCACGC
LOC_Os11g45030
OsAffx.24840.1.S1_at--508--1751Chr02:32375014..32375038 (25 bp)
ACCTCGAGCCCCTTGCTGAGGGCGA
LOC_Os02g52950
OsAffx.24840.1.S1_at--301--631Chr02:32374916..32374940 (25 bp)
ATGCTGCCTGTGCTGACTGAGATGC
LOC_Os02g52950
OsAffx.24840.1.S1_at--1108--3852Chr01:20730490..20730790 (25 bp)
CTGAGATGCTTGATGAGTACTGGAA
NONE
OsAffx.24840.1.S1_at--1157--4711Chr02:32374860..32374884 (25 bp)
GCTGTCCAGTGTGTCCCTGGCGAAG
LOC_Os02g52950
OsAffx.24840.1.S1_at--843--6631Chr02:32374833..32374857 (25 bp)
GTTGTCACTGCTAGGGACAGAGGAA
LOC_Os02g52950
OsAffx.24840.1.S1_at--1135--5371Chr02:32374811..32374835 (25 bp)
GAAGCAAGATTCATCGAGGGCAAGT
LOC_Os02g52950
OsAffx.24840.1.S1_at--1--4931Chr02:32374776..32374800 (25 bp)
GCTTGATTCAGAGATACAAACGCAG
LOC_Os02g52950
OsAffx.24840.1.S1_at--1100--2191Chr02:32374761..32374785 (25 bp)
ACAAACGCAGATGCGGCGACATGAT
LOC_Os02g52950
OsAffx.24840.1.S1_at--490--8451Chr02:32374735..32374759 (25 bp)
TGGCCAAGGAGGTCTACGCCTTGCT
LOC_Os02g52950
Target Sequence 
ACATGGGCGCGCTCTTCGACTCCATCAGGGGCTCCCTCTCCCCGCACATCGACCAGGCCAAGGTGTACTACAAGCTGAAG
CGGCTCAAGGGCAAGTACCTGCACGCGGCGCCCGGCGCGTCCGCGGGACCGCACGAACGCCGCGTGCGCGACCTCTGCGC
GAGCGTCTGGGGCGCCGACCTCGAGCCCCTTGCTGAGGGCGACGACGAAAGGGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGACCAGCCGCGCACTGTCCCGGACGCCGCCGCCATGCTGCCTGTGCTGACTGAGATGCTTGATGAGTACTGGAAGACG
GATGGGCGAGCGCTGTCCAGTGTGTCCCTGGCGAAGGGGTTGTCACTGCTAGGGACAGAGGAAGCAAGATTCATCGAGGG
CAAGTGGAGGAGGCAGCTTGATTCAGAGATACAAACGCAGATGCGGCGACATGATCTGGCCAAGGAGGTCTACGCCTTGC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis