Browse Element(s) Details


OsAffx.2489.1.S1_s_at

Description tigr:9630.m00193
TID=OsAffx.2489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T4O12.20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0281011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2489.1.S1_s_at--203--4911Chr02:1070851..1070875 (25 bp)
GCTTCAGCCCATATTGCATTGAAAG
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--284--7671Chr02:1070818..1070842 (25 bp)
GGGATAACTGCCGTTGATTTCAATG
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--95--3831Chr02:1070811..1070835 (25 bp)
CTGCCGTTGATTTCAATGTTGGGAA
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--505--5331Chr02:1070789..1070813 (25 bp)
GAAGTCAGACCGCAGTGAGATGAAA
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--40--6311Chr02:1070771..1070795 (25 bp)
GATGAAAGTCACAGGAAAACGCAAA
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--369--10271Chr02:1070636..1070660 (25 bp)
TTTGCAAGAAAATTCAGCGCTGTGT
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--20--9671Chr02:1070623..1070647 (25 bp)
TCAGCGCTGTGTAAAGTCTGCACAA
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--441--7171Chr02:1070608..1070632 (25 bp)
GTCTGCACAAGTAGTAATTCTTTTG
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--859--5571Chr02:1070482..1070506 (25 bp)
GAAAGGATCACTTTTGGAGATCAAT
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--1004--6591Chr02:1070453..1070477 (25 bp)
GATTGATCAAACAACCAGACCTGCT
LOC_Os02g02810
OsAffx.2489.1.S1_s_at--800--2391Chr02:1070445..1070469 (25 bp)
AAACAACCAGACCTGCTTAACACCT
LOC_Os02g02810
Target Sequence 
GCTTCAGCCCATATTGCATTGAAAGAGGAAGGGGGGATAACTGCCGTTGATTTCAATGTTGGGAAGTCAGACCGCAGTGA
GATGAAAGTCACAGGAAAACGCAAAAGGAATGCACAACATTTGCAAGAAAATTCAGCGCTGTGTAAAGTCTGCACAAGTA
GTAATTCTTTTGTAGTGAGGTGTTGTGTGAAAGGATCACTTTTGGAGATCAATGATAGATTGATCAAACAACCAGACCTG
CTTAACACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2489.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis