Browse Element(s) Details


OsAffx.24952.1.S1_at

Description tigr:9631.m00245
TID=OsAffx.24952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0334010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03270Os.54885.1.S1_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03270OsAffx.24949.1.S1_x_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24952.1.S1_at--984--1691NONE
AGCCACATCCTGATTTTTCTTCTGG
NONE
OsAffx.24952.1.S1_at--1162--8191Chr03:1408419..1408443 (25 bp)
GGCAATCATGCCTTATCCAAACAGA
LOC_Os03g03340
OsAffx.24952.1.S1_at--343--2351Chr03:1408472..1408496 (25 bp)
AAAGCAACCAGCCATTAGTCCACAG
LOC_Os03g03340
OsAffx.24952.1.S1_at--507--2131Chr03:1408501..1408525 (25 bp)
ACAGTACGTGTTGCCTTGCACTCTT
LOC_Os03g03340
OsAffx.24952.1.S1_at--416--3231Chr03:1408549..1408573 (25 bp)
CAAGATTCGCATGCTCGTGTTGTAT
LOC_Os03g03340
OsAffx.24952.1.S1_at--776--3971Chr03:1408564..1408588 (25 bp)
CGTGTTGTATTCACCTTGCAAGGCA
LOC_Os03g03340
OsAffx.24952.1.S1_at--365--2411Chr03:1408589..1408613 (25 bp)
AAACACATCACGAGTTGCACAGCAA
LOC_Os03g03340
OsAffx.24952.1.S1_at--257--2151Chr03:1408607..1408631 (25 bp)
ACAGCAAACCTTCGCTTGGACAGAA
LOC_Os03g03340
OsAffx.24952.1.S1_at--1127--5631Chr03:1408625..1408649 (25 bp)
GACAGAACGAGTCCACAGCCTTAAC
LOC_Os03g03340
OsAffx.24952.1.S1_at--719--5171Chr03:1408656..1408680 (25 bp)
GCAATGCACCACCTCAAATGGCAAT
LOC_Os03g03340
OsAffx.24952.1.S1_at--5--331Chr03:1408701..1408725 (25 bp)
ATGTCTCGGCCGGTTAAAAGCTCCA
LOC_Os03g03340
Target Sequence 
AGCCACATCCTGATTTTTCTTCTGGCAATCATGCCTTATCCAAACAGAGAATGGCAAGATATCATCTCACACAAAGAAAG
CAACCAGCCATTAGTCCACAGTGGCACAGTACGTGTTGCCTTGCACTCTTCACCTTCATCACGCCCTGCGGCTCAAGATT
CGCATGCTCGTGTTGTATTCACCTTGCAAGGCAAAACACATCACGAGTTGCACAGCAAACCTTCGCTTGGACAGAACGAG
TCCACAGCCTTAACCGCCATGCAATGCACCACCTCAAATGGCAATGGGCATTGGCAGAAAGCGAGATGTCTCGGCCGGTT
AAAAGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis