Browse Element(s) Details


OsAffx.24964.1.S1_s_at

Description tigr:9639.m00370
TID=OsAffx.24964.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0458011/11hypothetical protein
LOC_Os01g6423011/11hypothetical protein
LOC_Os01g1305011/11hypothetical protein
LOC_Os03g190702/11long cell-linked locus protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04540OsAffx.19485.1.S1_s_at11/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.19485.1.S1_at10/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.3105.1.S1_at1/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04550OsAffx.30816.1.S1_s_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04550OsAffx.30816.2.S1_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04560Os.11301.1.S1_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04560Os.11301.1.S1_x_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04570OsAffx.31575.1.S1_x_at11/1111+1932987..1937558GRAS family transcription factor containing protein, expressed
LOC_Os11g04580OsAffx.24964.1.S1_s_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.1.S1_x_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_s_at7/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_x_at3/1111+1939369..1940190hypothetical protein
LOC_Os11g04590OsAffx.19487.1.S1_x_at11/1111+1941620..1943002GRAS family transcription factor containing protein
LOC_Os11g04600Os.49532.1.S1_s_at4/1111+1950555..1953193ankyrin repeat family protein, putative, expressed
LOC_Os11g04610NANA11+1959939..1960652retrotransposon, putative, centromere-specific
LOC_Os11g04620NANA11+1962165..1964246retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24964.1.S1_s_at--397--7553Chr11:1939434..1939458 (25 bp)
GTGGCGACTGCTGCGCCTGGCGGTG
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--840--4473Chr11:1939496..1939520 (25 bp)
GCCTGTTCAGCAACCTGCGGCGCGC
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--629--4653Chr11:1939730..1939754 (25 bp)
GCGTCGGGTGCTACGACTACATCGA
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--466--4013Chr11:1939731..1939755 (25 bp)
CGTCGGGTGCTACGACTACATCGAG
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--603--7193Chr11:1939732..1939756 (25 bp)
GTCGGGTGCTACGACTACATCGAGA
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--727--9433Chr11:1939733..1939757 (25 bp)
TCGGGTGCTACGACTACATCGAGAA
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--4--3993Chr11:1939734..1939758 (25 bp)
CGGGTGCTACGACTACATCGAGAAC
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--226--213Chr11:1940048..1940072 (25 bp)
ATTTGTTTTGCTACGACTACAATGG
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--884--8534Chr11:1940126..1940150 (25 bp)
TGGACGAGCAGCTCCTCGAGCTGTC
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--472--1873Chr11:1940129..1940153 (25 bp)
ACGAGCAGCTCCTCGAGCTGTCCAT
LOC_Os11g04580
OsAffx.24964.1.S1_s_at--982--1594Chr11:1940135..1940159 (25 bp)
AGCTCCTCGAGCTGTCCATGCCGAC
LOC_Os11g04580
Target Sequence 
GTGGCGACTGCTGCGCCTGGCGGTGCTCTGGGNGAGGAAGGGCAGCGCGGTGCACAGCCTNTGCCTGTTCAGCAACCTGC
GGCGCGCNGGCGTGGGCCTCGGCGTCGTCGGCGGCGGCGGCCGCAGCGAGCGCCTGCGGTACGGCGAGCCGGAGTACTCG
ATCGAGGAGACGCCGTCGGCGCGGGTGCTCTGCCTCATCCCCTGCATCGCCCCTGCTGTACNGNACACGCCCGGGTTCTA
CGGCGACGAGGACCGCTACTTCTTCTGCCGCTGGGACACGGAGCCCGAGTGCAGCAGCGTCGGGTGCTACGACTACATCG
AGAACNACGNGCTCAAGACGGAGCAGATTGTTCAGGTTNGNNNTNNNNNTAGANNNNANNTGACCANCTTGNNNANGCTG
NNNANNAANAATGNNGNANTNNNNNNATTTGTTTTGCTACGACTACAATGGTGAGCCGAGTGAGTGCGGCGGCGTGGAGG
ACGAGAGCTTCCCCGACGGCGCAATGGACGAGCAGCTCCTCGAGCTGTCCATGCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24964.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis