Browse Element(s) Details


OsAffx.24964.2.S1_x_at

Description gb:NM_188618.1
DB_XREF= gi:34904319
TID=OsAffx.24964.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g130505/11hypothetical protein
LOC_Os11g045803/11hypothetical protein
LOC_Os01g642303/11hypothetical protein
LOC_Os03g190702/11long cell-linked locus protein, putative, expressed
LOC_Os03g045601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24964.2.S1_x_at--446--1934Chr11:1939673..1939697 (25 bp)
ACGGCGACGAGGACCGCTACTTCTT
LOC_Os11g04580
OsAffx.24964.2.S1_x_at--609--1874Chr11:1939679..1939703 (25 bp)
ACGAGGACCGCTACTTCTTCTGCCG
LOC_Os11g04580
OsAffx.24964.2.S1_x_at--790--10553Chr11:1939693..1939717 (25 bp)
TTCTTCTGCCGCTGGGACACGGAGC
LOC_Os11g04580
OsAffx.24964.2.S1_x_at--374--1611Chr01:7260181..7260205 (25 bp)
AGCGGCGTCGGGTGCTACGACTACA
LOC_Os01g13050
OsAffx.24964.2.S1_x_at--885--2451Chr01:7260389..7260632 (25 bp)
AACAATATGCAGTACCGGGCCGGCG
LOC_Os01g13050
OsAffx.24964.2.S1_x_at--1099--3933Chr11:1940242..1940266 (25 bp)
CGGCGGAAAGCATCGTGGCGCTCAT
NONE
OsAffx.24964.2.S1_x_at--451--8233Chr11:1940268..1940292 (25 bp)
GGCAAACGGCGGAGTAGCTCGTGGA
NONE
OsAffx.24964.2.S1_x_at--160--4754Chr11:1940296..1940320 (25 bp)
GCTGAGCATCGCGTGCGAGTTGAAC
NONE
OsAffx.24964.2.S1_x_at--810--1713Chr11:1940413..1940437 (25 bp)
ACCACCGGGAGAAGCAGGGCACACA
NONE
OsAffx.24964.2.S1_x_at--222--5973Chr11:1940421..1940445 (25 bp)
GAGAAGCAGGGCACACACCGTCGAT
NONE
OsAffx.24964.2.S1_x_at--977--2713Chr11:1940424..1940448 (25 bp)
AAGCAGGGCACACACCGTCGATGCG
NONE
Target Sequence 
ACGGCGACGAGGACCGCTACTTCTTCTGCCGCTGGGACACGGAGCCCGAGTGCAGCGGCGTCGGGTGCTACGACTACATC
GAGAACGACGTGCTCAAGACGGAGCAGATTGTTCAGGTTGGACATGGCGCTAGAGGGGATGTGACCATCTTGCCGACGCT
GGTGATCAACAATATGCAGTACCGGGCCGGCGGCGGAAAGCATCGTGGCGCTCATGGGGCAAACGGCGGAGTAGCTCGTG
GAGGAGCTGAGCATCGCGTGCGAGTTGAACGGAGCGGCGAGCTCCGCCGGCCAGAGGATGCCGGTGCCGGTGACGCGGCG
GATGCGGCGGCGGAGGAGGAGGAGGACGCCGACGACCACCGGGAGAAGCAGGGCACACACCGTCGATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24964.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis