Browse Element(s) Details


OsAffx.24977.1.S1_x_at

Description tigr:9631.m00453
TID=OsAffx.24977.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0533011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05300Os.18033.1.S1_at2/113+2551174..2551645cyclin-dependent kinases regulatory subunit, putative, expressed
LOC_Os03g05310Os.16119.1.S1_at11/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05310Os.16824.1.A1_at1/113+2555615..2559516Pheophorbide a oxygenase, chloroplast precursor, putative, expressed
LOC_Os03g05320Os.14245.1.S1_s_at11/113+2560314..2562693expressed protein
LOC_Os03g05330Os.27179.1.S1_at11/113+2576121..2584586HEAT repeat family protein, expressed
LOC_Os03g05330OsAffx.24977.1.S1_x_at11/113+2576121..2584586HEAT repeat family protein, expressed
LOC_Os03g05340NANA3+2589151..2598108retrotransposon protein, putative, unclassified, expressed
LOC_Os03g05350NANA3+2598775..2603160retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.18.S1_x_at11/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.3.S1_x_at9/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.54071.1.S1_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_x_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_at3/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.17756.1.S1_x_at1/113+2603369..2616015retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24977.1.S1_x_at--888--6291Chr03:2583246..2583270 (25 bp)
GATGATGACCTAAGCGTTCGCCTTG
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--368--2551Chr03:2583587..2583611 (25 bp)
AACTCCTAGCGCCTTTGATGGAAGT
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--183--1191Chr03:2583609..2583633 (25 bp)
AGTAGATGGTTTGTCTTCACTCCTC
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--625--2411Chr03:2583638..2583662 (25 bp)
AAAAATATTTCACCTCTGATCGCCG
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--682--5251Chr03:2583837..2583929 (25 bp)
GAATCTGCTATCCAGGCGTTTGATG
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--944--5891Chr03:2583970..2583994 (25 bp)
GAGCTGCATGCTATCCTTTTTAGAT
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--451--10451Chr03:2583989..2584013 (25 bp)
TTAGATGATCAACGGTTCCTCGCTC
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--1080--5851Chr03:2584132..2584156 (25 bp)
GAGCCAATCACCAGATGCAGTTGTT
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--212--9491Chr03:2584172..2584196 (25 bp)
TCTGCACTGGGCCTTCTGATAAAGA
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--495--8851Chr03:2584231..2584255 (25 bp)
TGATCGGGCTGATTCATCCCAGAAT
LOC_Os03g05330
OsAffx.24977.1.S1_x_at--474--6991Chr03:2584275..2584299 (25 bp)
GTACGAAAACATCATCCGAGCCTCA
LOC_Os03g05330
Target Sequence 
GATGATGACCTAAGCGTTCGCCTTGCCTGTCGGAATACGTTCCAACTCCTAGCGCCTTTGATGGAAGTAGATGGTTTGTC
TTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCGTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAAC
TCTGTCGACTATCTCCTGCCAGAGTCGACAGCTACTTTGAATCTGCTATCCAGGCGTTTGATGCACCTTGGCCAGTCATC
AAAGCAAATGCAGTTTGCTTGGTGAGCTGCATGCTATCCTTTTTAGATGATCAACGGTTCCTCGCTCCTTACTTCTCCCA
GGTGTTTGCTATTTTGGTCGGTAGACTGAGCCAATCACCAGATGCAGTTGTTCGAGCAGCATCATCTTCTGCACTGGGCC
TTCTGATAAAGAGGTCTAACGTGGTTAAGACGTTGACTCCGAAATTTGATCGGGCTGATTCATCCCAGAATTTTCAACAT
GGAGATACTCGTACGAAAACATCATCCGAGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24977.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis