Browse Element(s) Details


OsAffx.24978.1.S1_at

Description tigr:9631.m00457
TID=OsAffx.24978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0537011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05340NANA3+2589151..2598108retrotransposon protein, putative, unclassified, expressed
LOC_Os03g05350NANA3+2598775..2603160retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.18.S1_x_at11/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.35344.3.S1_x_at9/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360Os.54071.1.S1_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_x_at4/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.22940.5.S1_at3/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05360OsAffx.17756.1.S1_x_at1/113+2603369..2616015retrotransposon protein, putative, unclassified
LOC_Os03g05370OsAffx.24978.1.S1_at11/113+2618382..2619587hypothetical protein
LOC_Os03g05380OsAffx.29410.2.S1_at11/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.13325.1.S1_at2/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.29576.5.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_x_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24978.1.S1_at--321--8051Chr03:2619005..2619029 (25 bp)
GGAGATATGCTCCTATGCAGCACTT
LOC_Os03g05370
OsAffx.24978.1.S1_at--517--2071Chr03:2619026..2619050 (25 bp)
ACTTGGCTCCTCAAGCATTTGCATA
LOC_Os03g05370
OsAffx.24978.1.S1_at--1106--4951Chr03:2619046..2619070 (25 bp)
GCATATCCGTCAATGGCATCAGCAC
LOC_Os03g05370
OsAffx.24978.1.S1_at--764--3851Chr03:2619078..2619102 (25 bp)
CTGAACATCGCAACCCAGACATGGG
LOC_Os03g05370
OsAffx.24978.1.S1_at--926--771Chr03:2619148..2619172 (25 bp)
ATGTGCCTGAGCTTAATCTCTGGTT
LOC_Os03g05370
OsAffx.24978.1.S1_at--57--8931Chr03:2619209..2619233 (25 bp)
TGACCTCTCCTCGTTGGAATTGGAC
LOC_Os03g05370
OsAffx.24978.1.S1_at--801--10872Chr10:7861156..7861297 (24 bp)
TTGGAAGGAGCTTCACCTGCCGGAG
NONE
OsAffx.24978.1.S1_at--57--4631Chr03:2619298..2619322 (25 bp)
GCGAGGATTCTCAGCTTGTCAGTCT
LOC_Os03g05370
OsAffx.24978.1.S1_at--813--1151Chr03:2619318..2619342 (25 bp)
AGTCTGGGCTTTGGCAAGTTCTGCG
LOC_Os03g05370
OsAffx.24978.1.S1_at--1110--7191Chr03:2619342..2619366 (25 bp)
GTCGCAAGGTTCTTACACCCTAATG
LOC_Os03g05370
OsAffx.24978.1.S1_at--520--10011Chr03:2619497..2619521 (25 bp)
TAGCAGCAACGGCATATCGGAACTC
LOC_Os03g05370
Target Sequence 
GGAGATATGCTCCTATGCAGCACTTGGCTCCTCAAGCATTTGCATATCCGTCAATGGCATCAGCACCTACCGCCTGAACA
TCGCAACCCAGACATGGGAGGAAGTTGGCAAGTGGACCCTTCCCTTCCACGGCAAGGTTGAGTATGTGCCTGAGCTTAAT
CTCTGGTTTGGCCTCTCTGCCGAGTCCCACCACTTGGCTGCTGCTGACCTCTCCTCGTTGGAATTGGACTCCCAGCCACA
GCTACTAGTAGGACCTTGGAAGGAGCTTCACCTGCCGGAGGAATGGAAGGAATGCGAGGATTCTCAGCTTGTCAGTCTGG
GCTTTGGCAAGTTCTGCGTCGCAAGGTTCTTACACCCTAATGATAGGATTCACAAAGGCGAGCTGGGCGATGAGGAATTA
TCTAGCCAGAATTGTATCACTGTCTTGACTGGTGTGGAGGTGGTGCCACGTGTCCCGAATGCCAACGTCAATTCAAATAG
CAGCGGCAGCGTTAGCAGCAACGGCATATCGGAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis